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2013
LaMarche BL, Crowell KL, Jaitly N, Petyuk VA, Shah AR, Polpitiya AD, Sandoval JD, Kiebel GR, Monroe ME, Callister SJ et al..  2013.  MultiAlign: a multiple LC-MS analysis tool for targeted omics analysis.. BMC Bioinformatics.
2012
Alfaro JF, Gong C-X, Monroe ME, Aldrich JT, Clauss TRW, Purvine SO, Wang Z, Camp DG, Shabanowitz J, Stanley P et al..  2012.  Tandem mass spectrometry identifies many mouse brain O-GlcNAcylated proteins including EGF domain-specific O-GlcNAc transferase targets.. Proc Natl Acad Sci U S A.
2011
Matzke MM, Waters KM, Metz TO, Jacobs JM, Sims AC, Baric RS, Pounds JG, Webb-Robertson B-JM.  2011.  Improved quality control processing of peptide-centric LC-MS proteomics data.. Bioinformatics.
2010
Webb-Robertson B-JM, McCue LAnn, Waters KM, Matzke MM, Jacobs JM, Metz TO, Varnum SM, Pounds JG.  2010.  Combined statistical analyses of peptide intensities and peptide occurrences improves identification of significant peptides from MS-based proteomics data.. J Proteome Res.
Petyuk VA, Mayampurath AM, Monroe ME, Polpitiya AD, Purvine SO, Anderson GA, Camp DG, Smith RD.  2010.  DtaRefinery, a software tool for elimination of systematic errors from parent ion mass measurements in tandem mass spectra data sets.. Mol Cell Proteomics.
Adkins JN, Mottaz H, Metz TO, Ansong C, Manes NP, Smith RD, Heffron F.  2010.  Performing comparative peptidomics analyses of Salmonella from different growth conditions.. Methods Mol Biol.
2008
Zhang Q, Petyuk VA, Schepmoes AA, Orton DJ, Monroe ME, Yang F, Smith RD, Metz TO.  2008.  Analysis of non-enzymatically glycated peptides: neutral-loss-triggered MS(3) versus multi-stage activation tandem mass spectrometry.. Rapid Commun Mass Spectrom.
Petyuk VA, Jaitly N, Moore RJ, Ding J, Metz TO, Tang K, Monroe ME, Tolmachev AV, Adkins JN, Belov ME et al..  2008.  Elimination of systematic mass measurement errors in liquid chromatography-mass spectrometry based proteomics using regression models and a priori partial knowledge of the sample content.. Anal Chem.
Monroe ME, Shaw JL, Daly DS, Adkins JN, Smith RD.  2008.  MASIC: a software program for fast quantitation and flexible visualization of chromatographic profiles from detected LC-MS(/MS) features.. Comput Biol Chem.
Zhang Q, Tang N, Schepmoes AA, Phillips LS, Smith RD, Metz TO.  2008.  Proteomic profiling of nonenzymatically glycated proteins in human plasma and erythrocyte membranes.. J Proteome Res.
2007
Zhang Q, Frolov A, Tang N, Hoffmann R, van de Goor T, Metz TO, Smith RD.  2007.  Application of electron transfer dissociation mass spectrometry in analyses of non-enzymatically glycated peptides.. Rapid Commun Mass Spectrom.
Monroe ME, Tolić N, Jaitly N, Shaw JL, Adkins JN, Smith RD.  2007.  VIPER: an advanced software package to support high-throughput LC-MS peptide identification.. Bioinformatics.
2006
Metz TO, Jacobs JM, Gritsenko MA, Fontès G, Qian W-J, Camp DG, Poitout V, Smith RD.  2006.  Characterization of the human pancreatic islet proteome by two-dimensional LC/MS/MS.. J Proteome Res.
2005
Shen Y, Zhang R, Moore RJ, Kim J, Metz TO, Hixson KK, Zhao R, Livesay EA, Udseth HR, Smith RD.  2005.  Automated 20 kpsi RPLC-MS and MS/MS with chromatographic peak capacities of 1000-1500 and capabilities in proteomics and metabolomics.. Anal Chem.
2002
Smith RD, Anderson GA, Lipton MS, Pasa-Tolic L, Shen Y, Conrads TP, Veenstra TD, Udseth HR.  2002.  An accurate mass tag strategy for quantitative and high-throughput proteome measurements.. Proteomics. 2(5):513-23.
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