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InfernoRDN

InfernoRDN can perform various downstream data analysis, data reduction, and data comparison tasks including normalization, hypothesis testing, clustering, and heatmap generation.

Related Publication(s): 
DAnTE: a statistical tool for quantitative analysis of -omics data.
Area of Research: 
Proteomics,

VIPER

VIPER (Visual Inspection of Peak/Elution Relationships) can be used to visualize and characterize the features detected during LC-MS analyses.

Related Publication(s): 
VIPER: an advanced software package to support high-throughput LC-MS peptide identification.
Area of Research: 
Proteomics,

DtaRefinery

Reduces mass measurement errors for parent ions of tandem MS/MS data by modeling systematic errors based on putative peptide identifications. This information is used to subtract out errors from parent ion protonated m

Related Publication(s): 
DtaRefinery, a software tool for elimination of systematic errors from parent ion mass measurements in tandem mass spectra data sets.
Area of Research: 
Proteomics,

DeconTools (Decon2LS)

Used to de-isotope mass spectra and to detect features from mass spectrometry data using observed isotopic signatures.

MultiAlign

Aligns multiple LC-MS datasets to one another after which LC-MS features can be matched to a database of peptides (typically an AMT tag database)

Area of Research: 
Metabolomics
Proteomics,
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