U.S. Department of Energy

Pacific Northwest National Laboratory

Featured Tools

InfernoRDN

InfernoRDN can perform various downstream data analysis, data reduction, and data comparison tasks including normalization, hypothesis testing, clustering, and heatmap generation.

Area of Research: 
Proteomics,

VIPER

VIPER (Visual Inspection of Peak/Elution Relationships) can be used to visualize and characterize the features detected during LC-MS analyses.

Area of Research: 
Proteomics,

DtaRefinery

Reduces mass measurement errors for parent ions of tandem MS/MS data by modeling systematic errors based on putative peptide identifications. This information is used to subtract out errors from parent ion protonated m

Area of Research: 
Proteomics,

DeconTools (Decon2LS)

Used to de-isotope mass spectra and to detect features from mass spectrometry data using observed isotopic signatures.

MultiAlign

Aligns multiple LC-MS datasets to one another after which LC-MS features can be matched to a database of peptides (typically an AMT tag database)

Area of Research: 
Metabolomics
Proteomics,
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