U.S. Department of Energy

Pacific Northwest National Laboratory

Fasta File, Protein Sequence, or Protein Database Related tools

Fasta File Splitter

Console application that reads a protein FASTA file and splits it apart into a number of sections. Although the splitting is random, each section will have a nearly identical number of residues.

Area of Research: 
Proteomics,

Uniprot DAT File Parser

The Uniprot DAT File Parser can read a Uniprot .Dat file and parse out the information for each entry, creating a series of tab delimited text files or creating a FASTA file.

Area of Research: 
Proteomics,

Protein Sequence Motif Extractor

The Protein Sequence Motif Extractor reads a fasta file or tab delimited file containing protein sequences, then looks for the specified motif in each protein sequence.

Area of Research: 
Proteomics,

Protein Digestion Simulator

The Protein Digestion Simulator can be used to read a text file containing protein or peptide sequences (

Area of Research: 
Proteomics,

Population Variation

A Population Variation plug-in for the 

Area of Research: 
Proteomics,
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