U.S. Department of Energy

Pacific Northwest National Laboratory

Data Analysis and Data Presentation Tools

ListPOR

The ListPOR program (List Parser for Outlier Removal) can be used to read a file containing columns of grouped values and remove outlier values using Grubb's test. 

Area of Research: 
Proteomics,

DanteR

DanteR is an entirely R-based program that provides a graphical front-end for common data analysis tasks in "omics", with an emphasis on proteomics.

Area of Research: 
Proteomics,

Active Data Canvas

Active Data Canvas is a web-based visual analytic tool to visualize data matrix (expression matrix) and for users to interactively identify the structured domain knowledges (e.g., pathways and other genesets) linked to a cluster.

Area of Research: 
Informatics

LcMsSpectator

Windows graphical user interface tool for viewing LC-MS data and identifications.

Area of Research: 
Proteomics,

VIBE: Visual Integration for Bayesian Evaluation

The Visual Integration for Bayesian Evaluation (VIBE) software is a visualization tool that allows the user to observe classification accuracies at the class level and evaluate classification accuracies on any subset of available data types based

Area of Research: 
Proteomics,

Amino Acid Residue Frequency Summarizer

The Residue Frequency Summarizer is a VB.NET command-line utility that reads in a text file or fasta file containing peptide or

Area of Research: 
Proteomics,

ScalaBlast

A high-performance multiprocessor implementation of the NCBI BLAST library.

Protein Coverage Summarizer

The Protein Coverage Summarizer can be used to determine the percent of the residues in each protein sequence that have been ide

Area of Research: 
Proteomics,

Venn Diagram Plotter

Draws correctly proportioned and positioned two and three circle Venn diagrams (aka Euler diagrams) whose colors can be customized and the diagrams copied to the clipboard or saved to disk.

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