U.S. Department of Energy

Pacific Northwest National Laboratory

Data Extraction and Analysis for LC-MS Based Proteomics (2009)

In 2009 we presented a short course at US HUPO, discussing label-free quantitative proteomics, AMT tag databases, and downstream data analysis using LC-MS analysis platforms. The topics discussed included


  • Overview of Label-Free Quantitative Proteomics
  • Feature discovery in LC-MS datasets
  • Biological Application of the AMT tag Approach


These topics were chosen to educate researchers about some of the latest developments in high throughput LC-MS analysis, while also presenting aspects to consider when design large-scale experiments and extracting biological knowledge from large-scale experiments.


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