U.S. Department of Energy

Pacific Northwest National Laboratory

Biblio

Export 175 results:
2014
Webb IK, Garimella SVB, Tolmachev AV, Chen T-C, Zhang X, Norheim RV, Prost SA, LaMarche B, Anderson GA, Ibrahim YM et al..  2014.  Experimental evaluation and optimization of structures for lossless ion manipulations for ion mobility spectrometry with time-of-flight mass spectrometry.. Anal Chem.
Granholm V, Kim S, Navarro JCF, Sjölund E, Smith RD, Käll L.  2014.  Fast and accurate database searches with MS-GF+Percolator.. J Proteome Res.
Kronewitter SR, Slysz GW, Marginean I, Hagler CD, LaMarche BL, Zhao R, Harris MY, Monroe ME, Polyukh CA, Crowell KL et al..  2014.  GlyQ-IQ: glycomics quintavariate-informed quantification with high-performance computing and GlycoGrid 4D visualization.. Anal Chem.
Cox JT, Kronewitter SRyan, Shukla AK, Moore RJ, Smith RD, Tang K.  2014.  High Sensitivity Combined with Extended Structural Coverage of Labile Compounds via Nanoelectrospray Ionization at Subambient Pressures. Analytical Chemistry.
Webb IK, Chen T-C, Danielson WF, Ibrahim YM, Tang K, Anderson GA, Smith RD.  2014.  Implementation of dipolar resonant excitation for collision induced dissociation with ion mobility/time-of-flight MS.. J Am Soc Mass Spectrom.
Cox JT, Marginean I, Kelly RT, Smith RD, Tang K.  2014.  Improving the Sensitivity of Mass Spectrometry by Using a New Sheath Flow Electrospray Emitter Array at Subambient Pressures.. J Am Soc Mass Spectrom.
Sadler NC, Melnicki MR, Serres MH, Merkley ED, Chrisler WB, Hill EA, Romine MF, Kim S, Zink EM, Datta S et al..  2014.  Live cell chemical profiling of temporal redox dynamics in a photoautotrophic cyanobacterium.. ACS Chem Biol.
Martin JL, Yates PA, Soysa R, Alfaro JF, Yang F, Burnum-Johnson KE, Petyuk VA, Weitz KK, Camp DG, Smith RD et al..  2014.  Metabolic reprogramming during purine stress in the protozoan pathogen Leishmania donovani.. PLoS Pathog.
Webb IK, Garimella SVB, Tolmachev AV, Chen T-C, Zhang X, Cox JT, Norheim RV, Prost SA, LaMarche B, Anderson GA et al..  2014.  Mobility-resolved ion selection in uniform drift field ion mobility spectrometry/mass spectrometry: dynamic switching in structures for lossless ion manipulations.. Anal Chem.
Kronewitter SRyan, Marginean I, Cox JT, Zhao R, Hagler CD, Shukla AK, Carlson TS, Adkins JN, Camp DG, Moore RJ et al..  2014.  Polysialylated N-Glycans Identified in Human Serum Through Combined Developments in Sample Preparation, Separations and ESI-MS.. Anal Chem.
Zhang B, Wang J, Wang X, Zhu J, Liu Q, Shi Z, Chambers MC, Zimmerman LJ, Shaddox KF, Kim S et al..  2014.  Proteogenomic characterization of human colon and rectal cancer.. Nature.
Chen T-C, Webb IK, Harrer MB, Garimella S, Prost SA, Norheim R, Zhang X, Cox JT, LaMarche BL, Tang K et al..  2014.  Rectangular Ion Funnel (RIF): Conceptualization and Analytical Performance of a New ESI-MS Interface for Structures for Lossless Ion Manipulations (SLIM).
Guo J, Gaffrey MJ, Su D, Liu T, Camp DG, Smith RD, Qian W-J.  2014.  Resin-assisted enrichment of thiols as a general strategy for proteomic profiling of cysteine-based reversible modifications.. Nat Protoc.
Amidan BG, Orton DJ, LaMarche BL, Monroe ME, Moore RJ, Venzin AM, Smith RD, Sego LH, Tardiff MF, Payne SH.  2014.  Signatures for Mass Spectrometry Data Quality.. J Proteome Res.
Garimella SVB, Ibrahim YM, Webb IK, Tolmachev AV, Zhang X, Prost SA, Anderson GA, Smith RD.  2014.  Simulation of electric potentials and ion motion in planar electrode structures for lossless ion manipulations (SLIM).. J Am Soc Mass Spectrom.
Liu X, Segar MW, Li SCheng, Kim S.  2014.  Spectral probabilities of top-down tandem mass spectra.. BMC Genomics.
Webb-Robertson B-J, Kim Y-M, Zink EM, Hallaian KA, Zhang Q, Madupu R, Waters KM, Metz TO.  2014.  A Statistical Analysis of the Effects of Urease Pre-treatment on the Measurement of the Urinary Metabolome by Gas Chromatography-Mass Spectrometry.. Metabolomics.
Merkley ED, Metz TO, Smith RD, Baynes JW, Frizzell N.  2014.  The succinated proteome.. Mass Spectrom Rev.
2013
Conlon BP, Nakayasu ES, Fleck LE, LaFleur MD, Isabella VM, Coleman K, Leonard SN, Smith RD, Adkins JN, Lewis K.  2013.  Activated ClpP kills persisters and eradicates a chronic biofilm infection.. Nature. (7476)
Matzke MM, Brown JN, Gritsenko MA, Metz TO, Pounds JG, Rodland KD, Shukla AK, Smith RD, Waters KM, McDermott JE et al..  2013.  A comparative analysis of computational approaches to relative protein quantification using peptide peak intensities in label-free LC-MS proteomics experiments.. Proteomics.
Deangelis KM, Sharma D, Varney R, Simmons B, Isern NG, Markilllie LMeng, Nicora C, Norbeck AD, Taylor RC, Aldrich JT et al..  2013.  Evidence supporting dissimilatory and assimilatory lignin degradation in Enterobacter lignolyticus SCF1.. Front Microbiol.
Schmidt BJ, Ebrahim A, Metz TO, Adkins JN, Palsson BØ, Hyduke DR.  2013.  GIM3E: condition-specific models of cellular metabolism developed from metabolomics and expression data.. Bioinformatics.
Nakayasu ES, Wu S, Sydor MA, Shukla AK, Weitz KK, Hixson KK, Kim J-S, Monroe ME, Pasa-Tolic L, Qian W-J et al..  2013.  Global determination of lysine acetylation stoichiometries.
Ansong C, Ortega C, Payne SH, Haft DH, Chauvignè-Hines LM, Lewis MP, Ollodart AR, Purvine SO, Shukla AK, Fortuin S et al..  2013.  Identification of widespread adenosine nucleotide binding in Mycobacterium tuberculosis.. Chem Biol. 20(1):123-33.
Crowell KL, Baker ES, Payne SH, Ibrahim YM, Monroe ME, Slysz GW, LaMarche BL, Petyuk VA, Piehowski PD, Danielson, III WF et al..  2013.  Increasing confidence of LC–MS identifications by utilizing ion mobility spectrometry. International Journal of Mass Spectrometry.

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