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Matzke MM, Datta S, Payne SH, Nicora CD, Shukla AK, Metz TO, Smith RD, Tardiff MF, Waters KM, McDermott JE et al..  Submitted.  Bayesian Proteoform Modeling Improves Protein Quantification of Global Proteomic Experiments. Molecular & Cellular Proteomics. File MCP_Bayesian_Proteoform_Dilution_All_Raw_Intensity.xlsx (15.74 MB)File MCP_Bayesian_Proteoform_Dilution_Normalized.xlsx (8.9 MB)
2013
Matzke MM, Brown JN, Gritsenko MA, Metz TO, Pounds JG, Rodland KD, Shukla AK, Smith RD, Waters KM, McDermott JE et al..  2013.  A comparative analysis of computational approaches to relative protein quantification using peptide peak intensities in label-free LC-MS proteomics experiments.. Proteomics.
Mitchell HD, Eisfeld AJ, Sims AC, McDermott JE, Matzke MM, Webb-Robertson B-JM, Tilton SC, Tchitchek N, Josset L, Li C et al..  2013.  A network integration approach to predict conserved regulators related to pathogenicity of influenza and SARS-CoV respiratory viruses.. PLoS One.
Sims AC, Tilton SC, Menachery VD, Gralinski LE, Schäfer A, Matzke MM, Webb-Robertson B-JM, Chang J, Luna ML, Long CE et al..  2013.  Release of severe acute respiratory syndrome coronavirus nuclear import block enhances host transcription in human lung cells.. J Virol.
Webb-Robertson B-JM, Matzke MM, Metz TO, McDermott JE, Walker H, Rodland KD, Pounds JG, Waters KM.  2013.  Sequential projection pursuit principal component analysis--dealing with missing data associated with new -omics technologies.. Biotechniques.
2011
Matzke MM, Waters KM, Metz TO, Jacobs JM, Sims AC, Baric RS, Pounds JG, Webb-Robertson B-JM.  2011.  Improved quality control processing of peptide-centric LC-MS proteomics data.. Bioinformatics.
Rasmussen AL, Diamond DL, McDermott JE, Gao X, Metz TO, Matzke MM, Carter VS, Belisle SE, Korth MJ, Waters KM et al..  2011.  Systems virology identifies a mitochondrial fatty acid oxidation enzyme, dodecenoyl coenzyme A delta isomerase, required for hepatitis C virus replication and likely pathogenesis.. J Virol.
2010
Webb-Robertson B-JM, McCue LAnn, Waters KM, Matzke MM, Jacobs JM, Metz TO, Varnum SM, Pounds JG.  2010.  Combined statistical analyses of peptide intensities and peptide occurrences improves identification of significant peptides from MS-based proteomics data.. J Proteome Res.
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