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Filters: Author is Monroe, Matthew E  [Clear All Filters]
2014
Fujimoto GM, Monroe ME, Rodriguez L, Wu C, Maclean B, Smith RD, Maccoss MJ, Payne SH.  2014.  Accounting for population variation in targeted proteomics.. J Proteome Res. 13(1):321-3.
Prost SA, Crowell KL, Baker ES, Ibrahim YM, Clowers BH, Monroe ME, Anderson GA, Smith RD, Payne SH.  2014.  Detecting and Removing Data Artifacts in Hadamard Transform Ion Mobility-Mass Spectrometry Measurements.. J Am Soc Mass Spectrom.
Kronewitter SR, Slysz GW, Marginean I, Hagler CD, LaMarche BL, Zhao R, Harris MY, Monroe ME, Polyukh CA, Crowell KL et al..  2014.  GlyQ-IQ: glycomics quintavariate-informed quantification with high-performance computing and GlycoGrid 4D visualization.. Anal Chem.
Amidan BG, Orton DJ, LaMarche BL, Monroe ME, Moore RJ, Venzin AM, Smith RD, Sego LH, Tardiff MF, Payne SH.  2014.  Signatures for Mass Spectrometry Data Quality.. J Proteome Res.
2013
Nakayasu ES, Wu S, Sydor MA, Shukla AK, Weitz KK, Hixson KK, Kim J-S, Monroe ME, Pasa-Tolic L, Qian W-J et al..  2013.  Global determination of lysine acetylation stoichiometries.
Crowell KL, Baker ES, Payne SH, Ibrahim YM, Monroe ME, Slysz GW, LaMarche BL, Petyuk VA, Piehowski PD, Danielson, III WF et al..  2013.  Increasing confidence of LC–MS identifications by utilizing ion mobility spectrometry. International Journal of Mass Spectrometry.
Crowell KL, Slysz GW, Baker ES, LaMarche BL, Monroe ME, Ibrahim YM, Payne SH, Anderson GA, Smith RD.  2013.  LC-IMS-MS Feature Finder: detecting multidimensional liquid chromatography, ion mobility and mass spectrometry features in complex datasets.. Bioinformatics.
Aylward FO, Burnum-Johnson KE, Tringe SG, Teiling C, Tremmel DM, Moeller JA, Scott JJ, Barry KW, Piehowski PD, Nicora CD et al..  2013.  Leucoagaricus gongylophorus produces diverse enzymes for the degradation of recalcitrant plant polymers in leaf-cutter ant fungus gardens.. Appl Environ Microbiol. File Spectra_for_fungal_CAZy_enzymes_identified_by_1_peptide.xlsx (1.21 MB)Package icon Acromyrmex_echinatior_proteomics_samples.zip (37.24 MB)Package icon Atta_cephalotes_proteomics_samples.zip (41.97 MB)Package icon Protein_FASTA_Files.zip (71.91 MB)
LaMarche BL, Crowell KL, Jaitly N, Petyuk VA, Shah AR, Polpitiya AD, Sandoval JD, Kiebel GR, Monroe ME, Callister SJ et al..  2013.  MultiAlign: a multiple LC-MS analysis tool for targeted omics analysis.. BMC Bioinformatics.
Nakayasu ES, Brown RN, Ansong C, Sydor MA, Imtiaz S, Mihai C, Sontag R, Hixson KK, Monroe ME, Sobreira TJP et al..  2013.  Multi-omic data integration links deleted in breast cancer 1 (DBC1) degradation to chromatin remodeling in inflammatory response.. Mol Cell Proteomics.
2012
Alfaro JF, Gong C-X, Monroe ME, Aldrich JT, Clauss TRW, Purvine SO, Wang Z, Camp DG, Shabanowitz J, Stanley P et al..  2012.  Tandem mass spectrometry identifies many mouse brain O-GlcNAcylated proteins including EGF domain-specific O-GlcNAc transferase targets.. Proc Natl Acad Sci U S A.
Burnum K.E, Hirota Y., Baker ES, Yoshie M., Ibrahim YM, Monroe ME, Anderson GA, Smith RD, Daikoku T., Dey S.K.  2012.  Uterine deletion of Trp53 compromises antioxidant responses in the mouse decidua.. Endocrinology. File Uterine deletion of Trp53 compromises antioxidant responses in the mouse decidua. Endocrinology 153 4568-4579.xlsx (2.93 MB)
2011
Zhang Q, Monroe ME, Schepmoes AA, Clauss TRW, Gritsenko MA, Meng D, Petyuk VA, Smith RD, Metz TO.  2011.  Comprehensive identification of glycated peptides and their glycation motifs in plasma and erythrocytes of control and diabetic subjects.. J Proteome Res.
2010
Petyuk VA, Mayampurath AM, Monroe ME, Polpitiya AD, Purvine SO, Anderson GA, Camp DG, Smith RD.  2010.  DtaRefinery, a software tool for elimination of systematic errors from parent ion mass measurements in tandem mass spectra data sets.. Mol Cell Proteomics.
2008
Zhang Q, Petyuk VA, Schepmoes AA, Orton DJ, Monroe ME, Yang F, Smith RD, Metz TO.  2008.  Analysis of non-enzymatically glycated peptides: neutral-loss-triggered MS(3) versus multi-stage activation tandem mass spectrometry.. Rapid Commun Mass Spectrom.
Metz TO, Qian W-J, Jacobs JM, Gritsenko MA, Moore RJ, Polpitiya AD, Monroe ME, Camp DG, Mueller PW, Smith RD.  2008.  Application of proteomics in the discovery of candidate protein biomarkers in a diabetes autoantibody standardization program sample subset.. J Proteome Res.
Ding J, Sorensen CM, Jaitly N, Jiang H, Orton DJ, Monroe ME, Moore RJ, Smith RD, Metz TO.  2008.  Application of the accurate mass and time tag approach in studies of the human blood lipidome.. J Chromatogr B Analyt Technol Biomed Life Sci.
Petyuk VA, Jaitly N, Moore RJ, Ding J, Metz TO, Tang K, Monroe ME, Tolmachev AV, Adkins JN, Belov ME et al..  2008.  Elimination of systematic mass measurement errors in liquid chromatography-mass spectrometry based proteomics using regression models and a priori partial knowledge of the sample content.. Anal Chem.
Monroe ME, Shaw JL, Daly DS, Adkins JN, Smith RD.  2008.  MASIC: a software program for fast quantitation and flexible visualization of chromatographic profiles from detected LC-MS(/MS) features.. Comput Biol Chem.
2007
Manes NP, Gustin JK, Rue J, Mottaz HM, Purvine SO, Norbeck AD, Monroe ME, Zimmer JSD, Metz TO, Adkins JN et al..  2007.  Targeted protein degradation by Salmonella under phagosome-mimicking culture conditions investigated using comparative peptidomics.. Mol Cell Proteomics.
Monroe ME, Tolić N, Jaitly N, Shaw JL, Adkins JN, Smith RD.  2007.  VIPER: an advanced software package to support high-throughput LC-MS peptide identification.. Bioinformatics.
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