Pacific Northwest National Laboratory

Biblio

Export 175 results:

Submitted

Matzke MM, Datta S, Payne SH, Nicora CD, Shukla AK, Metz TO, Smith RD, Tardiff MF, Waters KM, McDermott JE et al.. Submitted. Bayesian Proteoform Modeling Improves Protein Quantification of Global Proteomic Experiments. Molecular & Cellular Proteomics.

MCP_Bayesian_Proteoform_Dilution_All_Raw_Intensity.xlsx (15.74 MB)

MCP_Bayesian_Proteoform_Dilution_Normalized.xlsx (8.9 MB)

Lourdes P-C, Mercer RG, Gurinovich A, Callister SJ, Wright AT, Westbye AB, J. Beatty T, Lang AS. Submitted. Gene Co-Expression Network Analysis in Rhodobacter capsulatus and Application to Comparative Expression Analysis of Rhodobacter sphaeroides. BMC Genomics.

Nakayasu ES, Sydor MA, Brown RN, Sobreira TJP, Slysz GW, Humphrys DR, Skarina T, Onoprienko O, Di Leo R, Deatherage BL et al.. Submitted. Identification of Salmonella Typhimurium deubiquitinase SseL substrates by immunoaffinity enrichment and quantitative proteomic analysis.

Monroe M.E. Submitted. Test presentation.

2019

Attah I.K, Garimella S.VB, Webb I.K, Nagy G., Norheim R.V, Schimelfenig C.E, Ibrahim Y.M, Smith R.D. 2019. Dual Polarity Ion Confinement and Mobility Separations. J. Am. Soc. Mass Spectrom..

Gan N., Nakayasu E.S, Hollenbeck P.J, Luo Z.Q. 2019. Legionella pneumophila inhibits immune signalling via MavC-mediated transglutaminase-induced ubiquitination of UBE2N. Nat Microbiol.

Kyle J.E, Burnum-Johnson K.E, Wendler J.P, Eisfeld A.J, Halfmann P.J, Watanabe T., Sahr F., Smith R.D, Kawaoka Y., Waters K.M et al.. 2019. Plasma lipidome reveals critical illness and recovery from human Ebola virus disease. Proc. Natl. Acad. Sci. U.S.A..

Gibbons B.C, Fillmore T.L, Gao Y., Moore R.J, Liu T., Nakayasu E.S, Metz T.O, Payne S.H. 2019. Rapidly Assessing the Quality of Targeted Proteomics Experiments through Monitoring Stable-Isotope Labeled Standards. J. Proteome Res..

Nagy G., Veli?kovi? D., Chu R.K, Carrell A.A, Weston D.J, Ibrahim Y.M, Anderton C.R, Smith R.D. 2019. Towards resolving the spatial metabolome with unambiguous molecular annotations in complex biological systems by coupling mass spectrometry imaging with structures for lossless ion manipulations. Chem. Commun. (Camb.).

2018

Bilbao A., Gibbons B.C, Slysz G.W, Crowell K.L, Monroe M.E, Ibrahim Y.M, Smith R.D, Payne S.H, Baker E.S. 2018. An algorithm to correct saturated mass spectrometry ion abundances for enhanced quantitation and mass accuracy in omic studies. Int J Mass Spectrom.

Orton D.J, Tfaily M.M, Moore R.J, LaMarche B.L, Zheng X., Fillmore T.L, Chu R.K, Weitz K.K, Monroe M.E, Kelly R.T et al.. 2018. A Customizable Flow Injection System for Automated, High Throughput, and Time Sensitive Ion Mobility Spectrometry and Mass Spectrometry Measurements. Anal. Chem..

Nagy G., Chouinard C.D, Attah I.K, Webb I.K, Garimella S.VB, Ibrahim Y.M, Baker E.S, Smith R.D. 2018. Distinguishing enantiomeric amino acids with chiral cyclodextrin adducts and structures for lossless ion manipulations. Electrophoresis.

Kyle J.E, Aly N., Zheng X., Burnum-Johnson K.E, Smith R.D, Baker E.S. 2018. Evaluating lipid mediator structural complexity using ion mobility spectrometry combined with mass spectrometry. Bioanalysis.

Shi T., Gaffrey M.J, Fillmore T.L, Nicora C.D, Yi L., Zhang P., Shukla A.K, Wiley H.S, Rodland K.D, Liu T. et al.. 2018. Facile carrier-assisted targeted mass spectrometric approach for proteomic analysis of low numbers of mammalian cells. Commun Biol.

Kramer P.A, Duan J., Gaffrey M.J, Shukla A.K, Wang L., Bammler T.K, Qian W.J, Marcinek D.J. 2018. Fatiguing contractions increase protein S-glutathionylation occupancy in mouse skeletal muscle. Redox Biol.

Ortega C., Frando A., Webb-Robertson B.J, Anderson L.N, Fleck N., Flannery E.L, Fishbaugher M., Murphree T.A, Hansen J.R, Smith R.D et al.. 2018. A Global Survey of ATPase Activity in Plasmodium falciparum Asexual Blood Stages and Gametocytes. Mol. Cell Proteomics.

Ortega C., Frando A., Webb-Robertson B.J, Anderson L.N, Fleck N., Flannery E.L, Fishbaugher M., Murphree T.A, Hansen J.R, Smith R.D et al.. 2018. A Global Survey of ATPase Activity in Plasmodium falciparum Asexual Blood Stages and Gametocytes. Mol. Cell Proteomics.

Orwoll E.S, Wiedrick J., Jacobs J., Baker E.S, Piehowski P., Petyuk V., Gao Y., Shi T., Smith R.D, Bauer D.C et al.. 2018. High-throughput serum proteomics for the identification of protein biomarkers of mortality in older men. Aging Cell.

Petyuk V.A, Chang R., Ramirez-Restrepo M., Beckmann N.D, Henrion M.YR, Piehowski P.D, Zhu K., Wang S., Clarke J., Huentelman M.J et al.. 2018. The human brainome: network analysis identifies HSPA2 as a novel Alzheimer’s disease target. Brain.

Prabhakaran A., Hamid A.M, Garimella S.VB, Valenzuela B.R, Ewing R.G, Ibrahim Y.M, Smith R.D. 2018. A Hybrid Constant and Oscillatory Field Ion Mobility Analyzer Using Structures for Lossless Ion Manipulations. J. Am. Soc. Mass Spectrom..

Chouinard C.D, Nagy G., Webb I.K, Shi T., Baker E.S, Prost S.A, Liu T., Ibrahim Y.M, Smith R.D. 2018. Improved Sensitivity and Separations for Phosphopeptides using Online Liquid Chromotography Coupled with Structures for Lossless Ion Manipulations Ion Mobility-Mass Spectrometry. Anal. Chem..

Zhang T., Gaffrey M.J, Thrall B.D, Qian W.J. 2018. Mass spectrometry-based proteomics for system-level characterization of biological responses to engineered nanomaterials. Anal Bioanal Chem.

Menachery V.D, Schafer A., Burnum-Johnson K.E, Mitchell H.D, Eisfeld A.J, Walters K.B, Nicora C.D, Purvine S.O, Casey C.P, Monroe M.E et al.. 2018. MERS-CoV and H5N1 influenza virus antagonize antigen presentation by altering the epigenetic landscape. Proc. Natl. Acad. Sci. U.S.A..

Matsushita K., Golgotiu K., Orton D.J, Smith R.D, Rodland K.D, Piehowski P.D, Hutchens M.P. 2018. Micropuncture of Bowman's Space in Mice Facilitated by 2 Photon Microscopy. J Vis Exp.

Rodland K.D, Piehowski P., Smith R.D. 2018. Moonshot Objectives: Catalyze New Scientific Breakthroughs-Proteogenomics. Cancer J.

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