U.S. Department of Energy

Pacific Northwest National Laboratory

Proteomics,

MSGFPlus/MASIC Data Processing Toolbox

DataProcessing toolbox for running MSGF+ and MASIC, then merging the results. Uses Windows batch files to automate the process for a folder of Thermo .Raw files

Area of Research: 
Proteomics,

LcMsSpectator

Windows graphical user interface tool for viewing LC-MS data and identifications.

Area of Research: 
Proteomics,

InfernoRDN

InfernoRDN can perform various downstream data analysis, data reduction, and data comparison tasks including normalization, hypothesis testing, clustering, and heatmap generation.

Area of Research: 
Proteomics,

MS-GF+

MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence database.

Area of Research: 
Proteomics,

DeconMSn

DeconMSn creates spectrum files for tandem mass spectrometry data.

Area of Research: 
Proteomics,

VIBE: Visual Integration for Bayesian Evaluation

The Visual Integration for Bayesian Evaluation (VIBE) software is a visualization tool that allows the user to observe classification accuracies at the class level and evaluate classification accuracies on any subset of available data types based

Area of Research: 
Proteomics,

Molecular Weight Calculator - .NET DLL Version

VB.NET DLL version of the Molecular Weight Calculator, supporting a range of molecular weight calculations for both chemical formulas and amino acids.

Area of Research: 
Proteomics,

Concatenated DTA to Mascot Generic File (MGF) File Converter

Command-line utility that reads in a _Dta.txt file and creates the equivalent Mascot Generic Format (MGF) file. _Dta.txt files are large text files that contain numerous .Dta files, all concatenated together.

Area of Research: 
Proteomics,

Amino Acid Residue Frequency Summarizer

The Residue Frequency Summarizer is a VB.NET command-line utility that reads in a text file or fasta file containing peptide or

Area of Research: 
Proteomics,

Uniprot DAT File Parser

The Uniprot DAT File Parser can read a Uniprot .Dat file and parse out the information for each entry, creating a series of tab delimited text files or creating a FASTA file.

Area of Research: 
Proteomics,

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