The X2XML program will read different mass spectrometry data files and create an mzXML file representation of the data (provided the proper vendor software is installed). It is an extension of the ReAdW application to support the following file formats:

• Xcalibur .RAW files
• Agilent .wiff files
• Micromass .DAT files (inside .Raw folders)
• Bruker .acqu files
• Bruker ASCII .ascii files
• PNNL ion-mobility spectrometry (IMS) .imf files
• Bruker FTICR S-folders, which are a single-file per spectrum representation of the large "s" files created by Bruker FTICR instruments. (This file format is the predominant format used to store Bruker FTICR data at PNNL)

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Download Source Code

Version	v1.3	Requirements	Microsoft NET Framework 1.1
Date Updated	February 18, 2008	File Size (Software Tool)	742 KB (ZIP)
Registration Required	No	File size (Source Code)	1.66 MB (ZIP)
Developers	Anoop Mayampurath and Matthew Monroe
Comments	See the complete Revision History for a history of changes

Acknowledgment

All publications that utilize this software should provide appropriate acknowledgement to PNNL and the OMICS.PNL.GOV website. However, if the software is extended or modified, then any subsequent publications should include a more extensive statement, using this text or a similar variant:

Portions of this research were supported by the NIH National Center for Research Resources (Grant RR018522), the W.R. Wiley Environmental Molecular Science Laboratory (a national scientific user facility sponsored by the U.S. Department of Energy's Office of Biological and Environmental Research and located at PNNL), and the National Institute of Allergy and Infectious Diseases (NIH/DHHS through interagency agreement Y1-AI-4894-01). PNNL is operated by Battelle Memorial Institute for the U.S. Department of Energy under contract DE-AC05-76RL0 1830.