MATLAB scripts to perform time-course analysis steps as outlined in the manuscript:
Linear discriminant analysis-based estimation of the false discovery rate for phosphopeptide identifications. Xiuxia Du, et. al. J. Proteome Res., 7 (6), 2195-2203 (2008). (abstract on PubMed)

Download Software Tool

Version	v1.0	Requirements	MatLab
Date Updated	November 5, 2007	File Size (Software Tool)	n/a
Registration Required	No	File size (Source Code)	131 MB (ZIP)
Developers	Xiuxia Du
Comments

Acknowledgment

All publications that utilize this software should provide appropriate acknowledgement to PNNL and the OMICS.PNL.GOV website. However, if the software is extended or modified, then any subsequent publications should include a more extensive statement, using this text or a similar variant:

Portions of this research were supported by the W.R. Wiley Environmental Molecular Science Laboratory (a national scientific user facility sponsored by the U.S. Department of Energy's Office of Biological and Environmental Research and located at PNNL). PNNL is operated by Battelle Memorial Institute for the U.S. Department of Energy under contract DE-AC05-76RL0 1830.