Protein Coverage Summarizer
The Protein Coverage Summarizer can be used to determine the percent of the residues in each protein sequence that have been identified. The program requires two input files: the first should contain the protein names and protein sequences (optionally with protein description) while the second should contain the peptide sequences and optionally also contain the protein name associated with each peptide sequence. A graphical user interface (GUI) is provided to allow the user to select the input files, set the options, and browse the coverage results. The results browser displays the protein sequences, highlighting the residues that were present in the peptide input file, and providing sequence coverage stats for each protein.
| Download Software Tool | Download Source Code |
| Version | v1.2.3365 | Requirements | Microsoft NET Framework 1.1 |
| Date Updated | March 19, 2009 | File Size (Software Tool) | 675 KB (ZIP) |
| Registration Required | No | File size (Source Code) | 1715 KB (ZIP) |
| Developers | Matthew Monroe; Niksa Blonder | ||
| Comments | See the complete Revision History for a history of changes | ||
Acknowledgment
All publications that utilize this software should provide appropriate acknowledgement to PNNL and the OMICS.PNL.GOV website. However, if the software is extended or modified, then any subsequent publications should include a more extensive statement, using this text or a similar variant:
Portions of this research were supported by the NIH National Center for Research Resources (Grant RR018522), the W.R. Wiley Environmental Molecular Science Laboratory (a national scientific user facility sponsored by the U.S. Department of Energy's Office of Biological and Environmental Research and located at PNNL), and the National Institute of Allergy and Infectious Diseases (NIH/DHHS through interagency agreement Y1-AI-4894-01). PNNL is operated by Battelle Memorial Institute for the U.S. Department of Energy under contract DE-AC05-76RL0 1830.