=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2615.2615.2.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2615.2615.2.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 01:18 PM, 0.3 sec. on pnode22.emsl.pnl.gov (M+H)+ mass = 1039.81300 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO total inten = 5485.6, lowest Sp = 160.9, # matched peptides = 66693 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 49 0 1042.21424 0.0000 1.5936 251.8 10/16 SO_2148 F.TQAKIDLPR.E 2. 2 /456 0 1040.14874 0.0182 1.5646 163.9 8/16 SO_4480 V.ISVTTFKDE.A 3. 3 / 85 0 1042.13288 0.0658 1.4887 228.6 10/16 SO_1168 F.SVNQHRFPG.I 4. 4 / 2 0 1042.21424 0.0764 1.4718 412.7 12/16 SO_4456 A.VTVQLTQPR.S 5. 5 /107 0 1041.22794 0.1148 1.4107 219.9 10/16 SO_3032 S.YKLAHQAIP.A 6. 6 /204 0 1041.22947 0.1231 1.3974 195.1 11/20 SO_0615 A.ISVAGGVRPGK.I 7. 7 / 56 0 1041.14320 0.1282 1.3894 244.4 11/18 SO_1171 E.LSARHASIDA.L 8. 8 / 69 0 1042.21747 0.1484 1.3571 238.5 10/18 SO_2233 R.LAGIALRGDR.A 9. 9 /149 0 1040.10561 0.1628 1.3342 205.9 9/18 SO_2119 K.SISSYPELSG.R 10. 10 /205 0 1042.14500 0.1816 1.3042 194.8 9/16 SO_0174 S.YSEMQLDGV.E 97. 97 / 1 0 1042.21101 0.4150 0.9323 508.4 14/18 SO_0185 S.VSLVTNQLPA.H 1. 0 SO_2148 exodeoxyribonuclease V, beta subunit (RecB) 2. 0 SO_4480 aldehyde dehydrogenase, AldA 3. 0 SO_1168 penicillin-binding protein 2 (MrdA) =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2615.2615.3.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2615.2615.3.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 09:32 AM, 0.4 sec. on pnode18.emsl.pnl.gov (M+H)+ mass = 1559.21600 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO total inten = 5484.3, lowest Sp = 194.8, # matched peptides = 74785 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 /265 0 1561.67474 0.0000 2.0058 215.9 17/60 SO_0189 N.GVAYTFTVTATNSAGT.G 2. 2 / 53 0 1560.69152 0.0324 1.9408 269.1 20/56 SO_0174 S.GELANAQGLSTLTER.A 3. 3 / 3 0 1558.84664 0.0344 1.9367 363.7 20/56 SO_2606 A.LGAWLGIKSIKESGV.E 4. 4 / 55 0 1559.66425 0.0936 1.8180 267.6 18/60 SO_3127 E.GEGSDTACPQAMPAHS.L 5. 5 /333 0 1556.89738 0.1193 1.7665 209.8 15/48 SO_1925 R.LKAGMFTRVELKY.D 6. 6 /309 0 1561.71788 0.1258 1.7534 212.1 15/52 SO_0780 G.SYTVGITEHAQELL.G 7. 7 /165 0 1558.67731 0.1351 1.7347 231.8 17/52 SO_0614 P.IAYERSSPIEHAQG.L 8. 8 / 4 0 1556.65973 0.1452 1.7144 361.0 21/60 SO_0397 L.IGSAPETIGPQGSADR.I 9. 9 /437 0 1561.71942 0.1455 1.7138 199.6 19/68 SO_2465 N.GIATGVALGNATVTASGT.T 10. 10 / 2 0 1561.76102 0.1507 1.7034 373.8 19/52 SO_1849 A.DLPLVLAVRAYSED.L 16. 16 / 1 0 1557.73246 0.1850 1.6347 399.1 20/52 SO_1408 R.NQALQWLAQGSIEV.I 1. 0 SO_0189 Ca binding surface adhesin 2. 0 SO_0174 general secretion pathway protein, GspL 3. 0 SO_2606 PqiB family protein =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2616.2616.1.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2616.2616.1.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 02:43 PM, 0.3 sec. on pnode19.emsl.pnl.gov (M+H)+ mass = 678.47000 ~ 3.0000 (+1), fragment tol = 0.0000 , AVG/MONO total inten = 5402.5, lowest Sp = 411.6, # matched peptides = 78240 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 15 0 678.75631 0.0000 1.9661 622.7 8/10 SO_3525 G.FVDLGQ.T 2. 2 / 19 0 677.77154 0.0010 1.9641 604.9 8/10 SO_1174 A.FNVIAN.K 3. 3 / 7 0 677.77154 0.0245 1.9179 667.0 9/12 SO_1484 G.FGGVLNA.F 4. 4 / 40 0 677.79335 0.0365 1.8943 548.8 8/10 SO_0063 L.MNDLGK.K 5. 5 /118 0 677.75021 0.0525 1.8628 442.6 8/12 SO_4598 I.GGMDIGQ.S 6. 6 / 19 0 677.79012 0.0543 1.8594 604.9 8/10 SO_1831 +1 E.MALVDE.T 0 SO_4354 conserved hypothetical cyt 7. 7 / 23 0 678.71640 0.0544 1.8592 587.2 8/10 SO_2940 S.NFVNGQ.S 8. 8 / 19 0 677.83649 0.0550 1.8580 604.9 8/10 SO_2618 V.MALTNK.L 9. 9 /155 0 678.79944 0.0618 1.8445 411.6 7/10 SO_2047 G.VYVLAN.I 10. 10 / 59 0 678.75631 0.0660 1.8364 513.3 8/10 SO_2098 N.DFVLAN.G 113. 112 / 1 0 680.83884 0.2790 1.4175 948.8 10/12 SO_3159 D.FGGVGLM.Q 1. 0 SO_3525 type IV pilin biogenesis protein 2. 0 SO_1174 leucyl-tRNA synthetase (LeuS) 3. 0 SO_1484 isocitrate lyase, AceA =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2618.2618.2.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2618.2618.2.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 01:18 PM, 0.3 sec. on pnode22.emsl.pnl.gov (M+H)+ mass = 1334.05200 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO total inten = 6655.1, lowest Sp = 209.8, # matched peptides = 74121 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 42 0 1334.41662 0.0000 2.2976 338.0 13/26 SO_2016 R.FASTHTGSAAPTVS.L 2. 2 / 18 0 1334.36856 0.2081 1.8194 393.4 14/26 SO_3069 I.DSTDADLAAAIAAE.L 3. 3 / 36 0 1334.41493 0.2432 1.7388 344.3 11/28 SO_0682 L.VESSAAAAAGDSVAK.F 4. 4 /152 0 1335.47126 0.2675 1.6830 271.9 9/22 SO_1332 M.GYHQLSMNQGSL.A 5. 5 /112 0 1335.40462 0.2687 1.6803 285.8 10/26 SO_2857 G.FGAQLLDAAGNNSG.V 6. 6 / 44 0 1334.49967 0.2938 1.6225 335.0 9/22 SO_3422 T.EEKPGFKIEASV.G 7. 7 /166 0 1332.53232 0.3059 1.5948 267.9 10/24 SO_4233 T.CHTGLAVMIDSAN.I 8. 8 /144 0 1335.44775 0.3072 1.5918 274.5 9/22 SO_3067 A.FEQIEAARGNIS.L 9. 9 /165 0 1332.48854 0.3082 1.5894 268.0 10/22 SO_2216 F.SDVSERKKAAQL.I 10. 10 /161 0 1335.70230 0.3084 1.5889 268.9 10/24 SO_3046 W.IVCSMVALITATI.A 146. 146 / 1 0 1336.58543 0.5056 1.1359 538.2 12/22 SO_1691 V.IQQFVDMAKAKG.F 1. 0 SO_2016 heat shock protein (HtpG) 2. 0 SO_3069 expressed inner membrane protein of unknown function 3. 0 SO_0682 prophage MuSo1 hypothetical protein =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2618.2618.3.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2618.2618.3.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 02:50 PM, 0.6 sec. on pnode20.emsl.pnl.gov (M+H)+ mass = 2000.57500 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO total inten = 6655.9, lowest Sp = 236.6, # matched peptides = 71908 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 24 0 2000.19801 0.0000 2.1202 380.2 19/64 SO_2638 S.FEKDYDAAKSEAKVREI.Y 2. 2 / 8 0 2003.20513 0.0418 2.0315 440.7 20/68 SO_4439 E.IYQNGQLINSQQINAGLQ.A 3. 3 / 31 0 2003.29140 0.0441 2.0267 369.7 21/76 SO_2510 H.LPVHAPTSGAVVAIELRASN.H 4. 4 /197 0 1998.05101 0.0601 1.9927 278.7 15/72 SO_4208 P.ANSDEALHEVALDIQEGAD.M 5. 5 / 22 0 1998.19011 0.0673 1.9775 392.4 19/72 SO_1101 Q.AQDIARNIIAAGVSVNRND.D 6. 6 /107 0 2003.24180 0.0711 1.9694 303.8 18/68 SO_2975 H.FENQIEKLINDVLGVDVG.D 7. 7 /111 0 2003.16030 0.1159 1.8744 301.6 18/68 SO_1500 L.DVTAQTLADREVLASREQ.L 8. 8 / 11 0 2002.26027 0.1454 1.8119 434.7 21/72 SO_2492 M.AIGQFEGVQEALARIIANT.Y 9. 9 / 75 0 2003.20513 0.1494 1.8034 327.9 16/64 SO_3193 L.PSAVFVRESVRQQEQIE.I 10. 10 / 2 0 2003.11070 0.1542 1.7932 494.7 22/76 SO_4265 W.LKDSNSVDAADLGTPEELAG.E 215. 215 / 1 0 2003.26361 0.4698 1.1242 560.5 24/80 SO_3089 I.MTGNIEIGIAGGADSSSVLPI.G 1. 0 SO_2638 leucine dehydrogenase, Ldh 2. 0 SO_4439 fimbrial usher protein 3. 0 SO_2510 NADH:ubiquinone oxidoreductase subunit, RnfC =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2619.2619.2.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2619.2619.2.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 01:55 PM, 0.4 sec. on pnode21.emsl.pnl.gov (M+H)+ mass = 1258.15100 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO total inten = 4177.6, lowest Sp = 148.4, # matched peptides = 75218 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 47 0 1259.39119 0.0000 1.8394 224.6 11/22 SO_0204 S.VQASNIGVEVKD.G 2. 2 /128 0 1256.43044 0.0531 1.7417 196.1 10/20 SO_0059 D.EQQLIKTEPGL.G 3. 3 /101 0 1256.39700 0.1520 1.5599 202.2 10/22 SO_3479 E.ASARNGSRPQVL.I 4. 4 / 53 0 1259.47593 0.1604 1.5444 222.4 12/22 SO_0296 W.LDSLSWLGAALI.V 5. 5 / 34 0 1256.43690 0.1605 1.5441 236.8 10/18 SO_0850 S.LRDNLVQERL.S 6. 6 /285 0 1257.51117 0.1676 1.5310 168.1 9/20 SO_3230 E.VERLGGRKTIK.L 7. 7 / 2 0 1255.44737 0.1800 1.5083 349.8 13/22 SO_A0100 G.KTLIPGFIDGHG.H 8. 8 / 58 0 1256.39054 0.1802 1.5079 220.8 10/20 SO_4658 H.NRDEPKLDGIV.V 9. 9 /416 0 1257.50471 0.2185 1.4375 153.8 10/22 SO_1393 L.LKEGAIVSAQLK.G 10. 10 / 15 0 1256.58982 0.2342 1.4086 253.7 10/18 SO_2384 F.MRDKLKVRLP.F 107. 107 / 1 0 1255.49220 0.4127 1.0803 366.1 13/20 SO_3222 M.PRPFLFNLPGP.D 1. 0 SO_0204 hypothetical tri-BON domain protein 2. 0 SO_0059 two component transcriptional regulator, Winged helix family 3. 0 SO_3479 pseudogene: type IV pilin biogenesis protein, interruption =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2619.2619.3.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2619.2619.3.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 01:55 PM, 0.5 sec. on pnode21.emsl.pnl.gov (M+H)+ mass = 1886.72200 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO total inten = 4177.6, lowest Sp = 178.4, # matched peptides = 72343 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 43 0 1884.04710 0.0000 2.3264 279.6 19/60 SO_4557 V.RVLSRRTQDSTQEVHA.T 2. 2 /313 0 1888.15394 0.0898 2.1174 195.2 20/72 SO_0947 H.LATDQGLNIAIITGGVPYA.P 3. 3 /285 0 1885.13211 0.1224 2.0417 199.2 18/60 SO_1599 P.AAKPCIWNYQDLVEYA.E 4. 4 /187 0 1884.16360 0.1290 2.0262 213.7 20/68 SO_0381 L.AKPVSEQINDTTLVALAL.L 5. 5 /398 0 1884.17006 0.1940 1.8750 186.4 18/68 SO_0916 C.IIRVASATDDAAIAQVIR.D 6. 6 /186 0 1885.32583 0.1942 1.8746 213.9 18/64 SO_0621 S.IRTKLSLWLTGLLVLGT.V 7. 7 / 7 0 1884.03434 0.2043 1.8512 354.5 22/60 SO_1570 R.WVVDASNSIIESVDYW.L 8. 8 /318 0 1885.24665 0.2145 1.8274 194.8 16/60 SO_0476 P.KPRVMTGFIEMQYARG.I 9. 9 /172 0 1885.18647 0.2255 1.8019 216.1 18/64 SO_1994 S.HAAAFPTCVTNLQKRAR.R 10. 10 /190 0 1886.09491 0.2369 1.7753 213.5 20/64 SO_3088 R.VKDINEKGLSNALSYAY.K 206. 206 / 1 0 1886.13958 0.5098 1.1403 473.2 24/64 SO_2047 F.DTLVANSLAILNDKERI.P 1. 0 SO_4557 methyl-accepting chemotaxis protein with Cache sensory domain 2. 0 SO_0947 ATP-dependent RNA helicase (SrmB) 3. 0 SO_1599 multi-domain beta-ketoacyl synthase (PfaC) =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2620.2620.2.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2620.2620.2.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 03:10 PM, 0.3 sec. on pnode17.emsl.pnl.gov (M+H)+ mass = 1036.24800 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO total inten = 4978.2, lowest Sp = 132.5, # matched peptides = 70515 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 55 0 1036.16332 0.0000 1.6200 195.7 9/18 SO_3514 P.FKASQADLGV.E 2. 2 / 16 0 1036.20815 0.0400 1.5552 231.9 7/14 SO_1758 E.FQFLDPLR.H 3. 3 / 65 0 1037.19769 0.1096 1.4425 188.5 7/14 SO_1255 S.QEQLLHLR.G 4. 4 / 10 0 1037.22119 0.1461 1.3832 250.1 7/14 SO_3311 R.RMYSNPLR.V 5. 5 /140 0 1036.20323 0.1498 1.3774 169.4 8/16 SO_1757 A.DKVEIYIGV.L 6. 6 / 38 0 1034.23371 0.1552 1.3686 206.0 8/16 SO_2593 D.FRTEVLGLV.K 7. 7 /203 0 1037.24405 0.1557 1.3677 158.2 8/16 SO_3547 K.RAVLHTALR.N 8. 8 / 58 0 1035.22016 0.1714 1.3424 194.3 7/16 SO_2900 Y.QFFINPLGV.Q 9. 9 / 96 0 1035.19714 0.1783 1.3311 179.1 7/16 SO_A0031 F.CALDVKEKE.K 10. 10 /163 0 1038.18568 0.2184 1.2662 163.8 7/16 SO_4073 P.KKGKGSYNR.K 27. 27 / 1 0 1037.17482 0.2910 1.1486 448.3 11/16 SO_0790 W.CADNPTFIR.K 1. 0 SO_3514 outer membrane transporter for chitooligosaccharides, TonB-dependent 2. 0 SO_1758 transcriptional regulator-like protein 3. 0 SO_1255 bifunctional diguanylate cyclase/signalling protein with EAL domain =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2620.2620.3.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2620.2620.3.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 03:10 PM, 0.4 sec. on pnode17.emsl.pnl.gov (M+H)+ mass = 1553.86800 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO total inten = 5034.6, lowest Sp = 192.4, # matched peptides = 70991 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 72 0 1552.88846 0.0000 1.9730 265.0 15/48 SO_0038 T.VVKAFLLDLQHRI.C 2. 2 / 73 0 1556.66142 0.0391 1.8959 263.6 15/48 SO_4543 K.NQALFSQQVYSDR.Y 3. 3 / 48 0 1553.91467 0.0513 1.8717 278.0 18/60 SO_0262 V.LSLLGAIGVALTVGLR.K 4. 4 /121 0 1556.65973 0.0676 1.8396 243.2 15/52 SO_4149 L.PQQADETQTKNAPK.F 5. 5 /168 0 1555.74653 0.1043 1.7672 233.1 13/44 SO_3004 K.TWRGERMSYVNR.D 6. 6 /172 0 1551.77259 0.1055 1.7648 232.2 14/48 SO_0644 D.RITVADDLLEHIR.K 7. 7 / 2 0 1556.01207 0.1115 1.7530 383.6 19/56 SO_0478 S.ILSLLVIFVGAALLI.F 8. 8 / 61 0 1556.78760 0.1542 1.6687 272.1 16/52 SO_4047 N.PEQAYLTPRPLSAI.P 9. 9 /482 0 1554.72688 0.1780 1.6218 193.8 15/56 SO_3287 E.LGDVAPDLDDAALLR.G 10. 10 / 17 0 1552.84040 0.1791 1.6197 319.9 18/56 SO_3855 L.LDVVNNAKPTVLIGV.S 94. 94 / 1 0 1553.65584 0.4034 1.1772 449.7 19/56 SO_0867 N.ENSVAIPDNNPNGVI.S 1. 0 SO_0038 coproporphyrinogen III oxidase, aerobic, HemF 2. 0 SO_4543 periplasmic esterase 3. 0 SO_0262 ABC heme exporter, inner membrane subunit, CcmB =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2621.2621.2.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2621.2621.2.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 09:32 AM, 0.3 sec. on pnode18.emsl.pnl.gov (M+H)+ mass = 813.09700 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO total inten = 4221.7, lowest Sp = 146.5, # matched peptides = 67506 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 68 0 810.96424 0.0000 1.6067 198.4 8/12 SO_4454 A.KGEVKLH.P 2. 2 /140 0 810.92110 0.0512 1.5244 179.4 8/14 SO_1275 L.AGGKVHEL.G 3. 3 / 28 0 813.87862 0.0944 1.4551 220.9 9/16 SO_2607 Q.QGAAAPADI.F 4. 4 /291 0 815.93765 0.1011 1.4444 156.9 8/14 SO_1066 G.QSIAPKAT.K 5. 5 /122 0 813.92499 0.1109 1.4285 183.3 8/14 SO_0779 V.QGPNAKAK.A 6. 6 / 33 0 810.92279 0.1110 1.4283 218.2 8/12 SO_3097 H.ALAHVYH.E 7. 7 / 27 0 813.91853 0.1112 1.4281 221.0 8/14 SO_3899 E.EGIPGVEL.I 8. 8 / 53 0 811.99214 0.1157 1.4208 204.2 8/14 SO_1900 L.KGQVPLGL.V 9. 9 /156 0 810.87796 0.1186 1.4162 176.9 8/14 SO_0610 A.AGGQVHLE.D 10. 10 /263 0 811.99537 0.1220 1.4107 160.2 7/12 SO_3866 S.KGKTIKH.T 37. 36 / 1 0 813.92822 0.2577 1.1927 276.4 8/12 SO_3651 V.KGPNNRK.F 1. 0 SO_4454 methyl-accepting chemotaxis protein 2. 0 SO_1275 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase, PuuC 3. 0 SO_2607 spore maturation protein A-related protein =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2621.2621.3.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2621.2621.3.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 02:43 PM, 0.4 sec. on pnode19.emsl.pnl.gov (M+H)+ mass = 1219.14200 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO total inten = 4336.0, lowest Sp = 184.7, # matched peptides = 76285 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 /287 0 1220.46644 0.0000 1.5903 203.9 12/40 SO_3654 V.KAPPSLANMYK.E 2. 2 / 19 0 1220.39980 0.0549 1.5030 293.0 15/40 SO_0538 T.KALLQAYLDQG.V 3. 3 /255 0 1221.47253 0.0957 1.4381 208.8 14/40 SO_3541 V.ISLIVKSAFGW.Q 4. 4 /446 0 1219.28885 0.1296 1.3842 188.3 11/36 SO_A0154 L.AESHQTQYRV.P 5. 5 / 3 0 1221.37138 0.1479 1.3551 367.6 16/40 SO_2543 I.EQHNGCIALVH.T 6. 6 /131 0 1216.40945 0.1528 1.3473 227.1 17/44 SO_0737 H.KADATSLVNLAL.G 7. 7 / 82 0 1217.31286 0.1688 1.3219 243.2 15/44 SO_1204 G.EAGGITQHIGAY.H 8. 8 / 48 0 1221.36969 0.1719 1.3170 260.9 15/40 SO_0072 T.RVAARTEAMES.G 9. 9 /226 0 1221.38843 0.1853 1.2956 212.6 12/32 SO_3286 V.FNYETMRME.M 10. 10 / 12 0 1217.37950 0.2006 1.2713 319.4 16/36 SO_0002 L.QANDMVKPQW.F 15. 15 / 1 0 1219.41842 0.2350 1.2166 497.4 18/36 SO_4081 N.KGFGYVHPKW.R 1. 0 SO_3654 uracil-DNA glycosylase, Ung 2. 0 SO_0538 glyceraldehyde 3-phosphate dehydrogenase family protein 3. 0 SO_3541 cation:alanine/glycine transporter, AGCS family =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2622.2622.1.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2622.2622.1.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 02:43 PM, 0.2 sec. on pnode19.emsl.pnl.gov (M+H)+ mass = 664.76900 ~ 3.0000 (+1), fragment tol = 0.0000 , AVG/MONO total inten = 4620.3, lowest Sp = 306.4, # matched peptides = 70284 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 6 0 664.75144 0.0000 1.0957 349.7 6/ 8 SO_3428 L.EKEMQ.Q 2. 2 / 3 0 664.81591 0.0264 1.0667 359.3 6/ 8 SO_1627 I.EKFIK.A 3. 2 / 3 0 664.77277 0.0264 1.0667 359.3 6/ 8 SO_1175 +2 V.EQFLK.R 0 SO_1604 4-prime-phosphopantetheiny 0 SO_3637 survival protein surA 4. 2 / 3 0 664.77277 0.0264 1.0667 359.3 6/ 8 SO_1232 D.EKFIQ.G 5. 3 / 6 0 664.79458 0.0312 1.0614 349.7 6/ 8 SO_3070 T.KEEMK.M 6. 3 / 6 0 664.70830 0.0312 1.0614 349.7 6/ 8 SO_3892 S.QEEMQ.H 7. 4 / 6 0 664.79458 0.0445 1.0469 349.7 6/ 8 SO_0220 +1 T.EKMEK.G 0 SO_4398 D-tyrosyl-tRNA(Tyr) deacyl 8. 5 / 6 0 662.66891 0.0470 1.0442 349.7 6/ 8 SO_0059 D.QEEEK.I 9. 6 / 3 0 664.81591 0.0577 1.0325 359.3 6/ 8 SO_1655 +1 T.KEFIK.R 0 SO_3509 N-acetyl-beta-D-glucosamin 10. 6 / 3 0 664.72963 0.0577 1.0325 359.3 6/ 8 SO_1795 +1 Q.QEFLQ.V 0 SO_4626 carboxylesterase, BioH 40. 17 / 1 0 665.71762 0.1087 0.9766 393.1 6/ 8 SO_3484 D.FKENQ.S 1. 0 SO_3428 alanyl-tRNA synthetase 2. 0 SO_1627 methionyl aminopeptidase 1 (Map) 3. 0 SO_1175 expressed protein of unknown function DUF1451 =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2623.2623.2.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2623.2623.2.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 01:18 PM, 0.4 sec. on pnode22.emsl.pnl.gov (M+H)+ mass = 1363.66200 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO total inten = 4112.8, lowest Sp = 132.9, # matched peptides = 72755 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 25 0 1366.50822 0.0000 1.9737 242.4 13/24 SO_3837 K.AAEALKEHGANRV.F 2. 2 /332 0 1363.73383 0.1432 1.6910 146.8 9/22 SO_2151 S.ILLLSLFNTCIL.Y 3. 3 / 15 0 1364.70478 0.1994 1.5801 266.0 11/22 SO_3665 A.RAILADRPILLL.D 4. 4 /157 0 1361.57148 0.2117 1.5560 175.9 11/24 SO_1156 V.EILKGPGSALYGR.S 5. 5 / 11 0 1365.68309 0.2270 1.5258 285.9 11/22 SO_4526 L.DLNLLPVLEILL.E 6. 6 /163 0 1365.68309 0.2423 1.4956 173.9 9/22 SO_4526 H.LDLNLLPVLEIL.L 7. 7 /204 0 1366.54813 0.2526 1.4751 165.5 10/22 SO_3874 I.NNNIKELSIAHL.Q 8. 8 / 21 0 1365.56183 0.2690 1.4428 258.3 11/24 SO_0095 G.KGGWITPGLIDAH.T 9. 9 /322 0 1363.69070 0.2697 1.4413 147.6 10/24 SO_0160 I.GTLIALMLPFSIS.F 10. 10 / 2 0 1365.64318 0.2791 1.4230 402.9 11/22 SO_0319 L.LKDVQDPKVPLL.V 46. 46 / 1 0 1363.58738 0.4124 1.1598 416.8 14/24 SO_3517 L.LILDSGQPVPPRA.Q 1. 0 SO_3837 ribose-phosphate pyrophosphokinase 2. 0 SO_2151 protein of unknown function DUF58 3. 0 SO_3665 ABC transporter ATP-binding/permease protein =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2623.2623.3.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2623.2623.3.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 02:50 PM, 0.7 sec. on pnode20.emsl.pnl.gov (M+H)+ mass = 2044.98900 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO total inten = 4112.8, lowest Sp = 160.7, # matched peptides = 72406 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 9 0 2046.44246 0.0000 2.0087 312.5 21/68 SO_0725 A.KVLAKLEKVQKDFNGSLK.G 2. 2 / 70 0 2047.30766 0.0455 1.9172 230.8 19/64 SO_A0165 R.QPKEGIWALYPHNRHLS.P 3. 3 /130 0 2043.33420 0.1871 1.6329 209.5 19/72 SO_1486 G.LELVSLGHSSITVSCQVRN.K 4. 4 / 12 0 2046.26345 0.1873 1.6324 305.4 21/72 SO_0424 K.ELPVDVLANAIKEYGIDAD.K 5. 5 / 74 0 2046.39933 0.1905 1.6260 228.6 17/68 SO_4711 K.IKVDNKVLHKPGKLTPEE.F 6. 6 /179 0 2045.41133 0.2061 1.5946 199.0 21/80 SO_1602 P.AAIASTIAPINALSPITGIIH.G 7. 7 /213 0 2043.46531 0.2253 1.5562 192.6 18/72 SO_3828 E.NARIPSLRDLMLIVAVGFG.I 8. 8 /330 0 2043.48341 0.2285 1.5497 176.4 18/72 SO_1336 N.RKGVTSLAPYGVLGLILWV.A 9. 9 /354 0 2042.32271 0.2292 1.5483 173.2 16/68 SO_3069 N.QQIAVLEETLQASKKQNL.A 10. 10 /192 0 2047.38732 0.2319 1.5430 195.4 19/76 SO_4693 L.AVGDQVIVEGLQKIRPGAPV.I 45. 45 / 1 0 2042.19176 0.3538 1.2979 372.2 25/76 SO_2571 N.TAAVKDQASPYSSGKPGTFE.A 1. 0 SO_0725 catalase/peroxidase HPI (KatG-1) 2. 0 SO_A0165 transcriptional regulator, LysR family 3. 0 SO_1486 cytosolic long-chain acyl-CoA thioester hydrolase family protein =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2624.2624.2.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2624.2624.2.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 01:18 PM, 0.3 sec. on pnode22.emsl.pnl.gov (M+H)+ mass = 1013.97400 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO total inten = 4557.5, lowest Sp = 162.3, # matched peptides = 71931 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 /305 0 1016.08728 0.0000 1.8741 179.6 10/20 SO_2951 T.NGTPAGSAELV.W 2. 2 /474 0 1014.15766 0.0794 1.7254 163.5 10/18 SO_3331 E.IEPKGKAAAE.I 3. 3 / 33 0 1016.13041 0.1026 1.6818 252.0 10/16 SO_3936 Q.DIEARAEVL.K 4. 4 /110 0 1016.19229 0.2323 1.4389 213.9 8/14 SO_3698 G.MVEYTIYP.D 5. 5 /114 0 1014.20249 0.2435 1.4178 212.1 10/16 SO_2743 L.IQWATGLPK.T 6. 6 / 98 0 1016.19705 0.2455 1.4140 217.7 10/18 SO_1949 F.NNMVPAGTVI.V 7. 7 /279 0 1011.96598 0.2473 1.4107 183.1 9/16 SO_2842 Y.DDGSFNVEE.I 8. 8 /228 0 1016.04737 0.2480 1.4094 190.2 10/18 SO_1197 S.NDKGNGKGEP.A 9. 9 /191 0 1014.24070 0.2503 1.4051 195.6 10/16 SO_2383 L.LLLDKAELV.F 10. 10 / 28 0 1015.29534 0.2675 1.3729 261.8 11/18 SO_4243 L.NLLLMAAGIV.T 203. 202 / 1 0 1014.15829 0.5868 0.7744 406.3 11/14 SO_4732 F.MTQEYMPN.T 1. 0 SO_2951 prophage LambdaSo expressed protein 2. 0 SO_3331 ParA-family protein 3. 0 SO_3936 sodium-type flagellar protein, MotX =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2624.2624.3.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2624.2624.3.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 09:32 AM, 0.4 sec. on pnode18.emsl.pnl.gov (M+H)+ mass = 1520.45700 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO total inten = 4593.0, lowest Sp = 178.7, # matched peptides = 73232 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 3 0 1517.69353 0.0000 2.0273 310.3 17/48 SO_0991 L.RWGEAHGFSPELM.E 2. 2 / 55 0 1518.88906 0.2296 1.5619 248.5 16/56 SO_2375 M.AINAGLALLMTGFIL.F 3. 3 / 89 0 1521.65698 0.2478 1.5249 234.9 17/44 SO_0283 Q.DKELQLRDDFKN.K 4. 4 /165 0 1520.66745 0.2648 1.4905 216.1 13/48 SO_3660 R.FELAHQGTLFLDE.V 5. 5 /134 0 1517.88095 0.2664 1.4873 224.8 15/52 SO_4609 A.WPIVGAIGLFLIAF.G 6. 6 /334 0 1522.72648 0.2942 1.4309 191.5 15/48 SO_1367 L.DAHYVISLYQSII.E 7. 7 /139 0 1518.78574 0.3150 1.3887 222.8 17/60 SO_1236 W.VLANLPKGIAHGTGIG.I 8. 8 /163 0 1522.77608 0.3222 1.3741 216.3 15/48 SO_4426 L.YLLKPHSGKTHQL.R 9. 9 /316 0 1520.62431 0.3245 1.3695 193.6 17/56 SO_2143 G.YDLGATAGFFAGTQT.I 10. 10 /162 0 1519.76727 0.3312 1.3559 216.4 16/52 SO_1602 S.ELNQAALFGLTKTL.N 51. 51 / 1 0 1517.85687 0.4798 1.0546 426.8 19/48 SO_4451 A.FIEMASTTLEMIM.S 1. 0 SO_0991 peptide chain release factor 2, PrfB 2. 0 SO_2375 integral IM membrane protein (DsrM?) 3. 0 SO_0283 type IV pilus biogenesis protein, PilO =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2625.2625.2.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2625.2625.2.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 01:55 PM, 0.4 sec. on pnode21.emsl.pnl.gov (M+H)+ mass = 1338.10000 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO total inten = 7357.9, lowest Sp = 187.7, # matched peptides = 69829 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 1 0 1338.45164 0.0000 2.5413 807.4 16/22 SO_4662 K.AHIAQAEQLNDK.M 2. 2 / 40 0 1335.48766 0.2732 1.8469 308.3 10/22 SO_1813 G.QFKAIDELANVS.G 3. 3 /167 0 1339.65056 0.3123 1.7477 245.1 9/22 SO_3653 E.AHLKLAAIIEFI.H 4. 4 /378 0 1335.57394 0.3511 1.6490 200.2 8/24 SO_1062 Q.TPNKPLPIAVVGE.A 5. 5 / 73 0 1339.48123 0.4020 1.5197 282.9 9/18 SO_2085 F.FEEDLQVRFR.P 6. 6 / 12 0 1337.33254 0.4150 1.4867 358.2 11/26 SO_3582 A.QSTSAAANSAKDAD.T 7. 7 /122 0 1335.61602 0.4157 1.4848 259.9 10/22 SO_3935 K.IIEECMILANVS.A 8. 8 / 2 0 1337.50033 0.4215 1.4701 565.1 14/22 SO_1375 K.GSLFTTDELIIQ.A 9. 9 /273 0 1339.56476 0.4313 1.4452 216.1 9/22 SO_3963 L.SCMAEKLSDKQV.L 10. 10 / 22 0 1336.54076 0.4323 1.4427 336.9 11/22 SO_0988 I.EIFEAMPKAGGW.L 1. 0 SO_4662 lemA protein 2. 0 SO_1813 DNA transport ComEA-like competence protein 3. 0 SO_3653 octaprenyl-diphosphate synthase, IspB =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2625.2625.3.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2625.2625.3.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 09:32 AM, 0.7 sec. on pnode18.emsl.pnl.gov (M+H)+ mass = 2006.64700 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO total inten = 7357.9, lowest Sp = 224.2, # matched peptides = 71674 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 7 0 2009.33755 0.0000 2.0644 434.1 22/68 SO_2723 D.ELVTAFRDISPKAPTHIL.I 2. 2 / 2 0 2007.24014 0.0639 1.9325 493.1 20/64 SO_4557 S.LKTNHLAVAELQRQQQE.V 3. 3 /374 0 2008.34955 0.1493 1.7562 234.7 16/64 SO_3966 L.AYILRSLPDTVYKQVLQ.S 4. 4 / 31 0 2005.09807 0.1498 1.7550 340.9 20/76 SO_4439 M.GGGLGSRTSRSGGQEQHAYV.D 5. 5 / 10 0 2008.13386 0.1868 1.6787 415.8 19/64 SO_4612 F.DFNTQPASQSLKEWLDQ.Q 6. 6 / 64 0 2009.13228 0.2421 1.5646 312.8 19/64 SO_1179 H.IEDEEAEEMESLETQLI.E 7. 7 /121 0 2009.29441 0.2454 1.5579 284.4 19/72 SO_1932 N.FLDVGGGATKERVAEAFKI.I 8. 8 / 59 0 2009.20644 0.2577 1.5323 315.1 19/76 SO_2461 A.SGVANGQTFKSSVQVIVTDA.V 9. 9 /395 0 2007.25888 0.2634 1.5206 232.4 18/72 SO_4232 A.TAAKDMAGNAVIPNFYVSH.Q 10. 10 /134 0 2004.18835 0.2732 1.5004 280.6 20/76 SO_0306 S.LLPTASFGSSGGDTRFSFGV.K 265. 265 / 1 0 2008.35294 0.6129 0.7991 493.6 21/60 SO_3808 R.NFILLKSNFRQYLGFF.S 1. 0 SO_2723 purine nucleoside phosphoramidase, HinT 2. 0 SO_4557 methyl-accepting chemotaxis protein with Cache sensory domain 3. 0 SO_3966 magnesium transporter, MgtE_2 =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2626.2626.1.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2626.2626.1.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 02:43 PM, 0.3 sec. on pnode19.emsl.pnl.gov (M+H)+ mass = 873.42300 ~ 3.0000 (+1), fragment tol = 0.0000 , AVG/MONO total inten = 5099.0, lowest Sp = 169.2, # matched peptides = 82653 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 1 0 873.97566 0.0000 1.9968 727.5 10/12 SO_0432 S.FHDVVEK.M 2. 2 / 11 0 873.97719 0.2734 1.4508 363.6 9/14 SO_1876 L.ERNVVVSA.P 3. 3 / 4 0 875.00510 0.2795 1.4387 464.8 9/12 SO_3786 P.ERTLVEK.M 4. 4 / 18 0 875.04839 0.2995 1.3987 337.3 8/12 SO_4128 G.FHTLIPF.V 5. 5 / 55 0 874.01710 0.3040 1.3898 280.4 8/14 SO_0223 L.KKELVEAG.A 6. 6 / 73 0 875.94518 0.3112 1.3754 263.5 7/12 SO_0225 E.VWDVLDE.V 7. 7 /142 0 874.02033 0.3209 1.3560 224.3 7/14 SO_2927 A.GVKNAKEK.A 8. 8 / 9 0 873.97566 0.3277 1.3424 370.3 8/12 SO_4145 V.VYHVVQE.Q 9. 9 / 71 0 874.02525 0.3312 1.3355 263.8 6/10 SO_4425 H.QRWQKK.A 10. 10 / 62 0 873.97719 0.3335 1.3309 270.5 7/14 SO_1178 P.PSTNAQKK.S 1. 0 SO_0432 aconitate hydratase 2,AcnB 2. 0 SO_1876 pseudogene: transcriptional regulator, lysR family, interruption 3. 0 SO_3786 expressed protein =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2627.2627.2.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2627.2627.2.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 03:10 PM, 0.3 sec. on pnode17.emsl.pnl.gov (M+H)+ mass = 838.01300 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO total inten = 5573.0, lowest Sp = 190.7, # matched peptides = 63328 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 85 0 836.91219 0.0000 1.5463 278.7 7/12 SO_2601 N.QDIADFK.K 2. 2 / 39 0 837.94332 0.0579 1.4568 319.3 8/14 SO_1933 G.KGTAADKF.A 3. 3 / 26 0 835.97056 0.0959 1.3980 333.0 8/12 SO_0943 E.LVQHIPE.L 4. 4 /148 0 836.01047 0.1004 1.3911 250.9 7/12 SO_2660 A.LVELSFK.V 5. 5 / 54 0 836.99846 0.1397 1.3303 293.6 8/14 SO_2557 A.VVKPAEPP.T 6. 6 / 17 0 836.91219 0.1399 1.3300 372.0 8/12 SO_3293 L.VVDDNFK.L 7. 7 /358 0 836.07711 0.1414 1.3276 203.7 8/14 SO_2361 I.VIAGCFLL.L 8. 8 / 31 0 837.90018 0.1533 1.3092 327.9 8/12 SO_0754 K.RGELSFE.N 9. 9 / 55 0 836.95855 0.1620 1.2958 293.1 8/12 SO_1065 K.RGESLKF.P 10. 10 /208 0 836.91219 0.1646 1.2918 229.7 7/12 SO_0134 R.DENAIFK.G 86. 85 / 1 0 836.95532 0.3546 0.9980 492.1 9/14 SO_A0039 S.KAPEPTPP.N 1. 0 SO_2601 C-terminal processing protease-1 2. 0 SO_1933 succinyl-CoA synthase, alpha subunit,SucD 3. 0 SO_0943 signalling protein with PAS and GGDEF domains =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2627.2627.3.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2627.2627.3.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 01:55 PM, 0.4 sec. on pnode21.emsl.pnl.gov (M+H)+ mass = 1256.51600 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO total inten = 5573.0, lowest Sp = 230.2, # matched peptides = 73196 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 /230 0 1256.38900 0.0000 1.8637 269.9 14/44 SO_0485 T.KAAAEAFAKEYG.G 2. 2 /489 0 1257.46158 0.0235 1.8199 230.9 15/52 SO_4446 L.AVVGPSGGGKTTLL.R 3. 3 /306 0 1256.43367 0.0271 1.8133 256.1 13/44 SO_2214 H.LGKTSALQSTHL.V 4. 4 /126 0 1258.29729 0.0362 1.7962 306.4 14/40 SO_A0080 V.EIPIDDSNCHD.F 5. 5 / 88 0 1259.43925 0.0550 1.7611 324.0 14/36 SO_2760 L.RLAIDYKKHD.T 6. 6 / 46 0 1258.48948 0.0634 1.7456 353.8 15/44 SO_0949 M.LGSLSLNLSQLI.Y 7. 7 /311 0 1258.34043 0.0786 1.7172 254.8 12/40 SO_3069 D.DDDINDMAVHL.D 8. 8 /410 0 1258.45449 0.0871 1.7013 241.3 13/36 SO_3472 D.RIATHILDYR.D 9. 9 /125 0 1259.43756 0.0892 1.6974 307.1 14/40 SO_A0086 Y.LREGDTLVVTR.L 10. 10 /394 0 1259.41470 0.0955 1.6857 243.4 14/48 SO_2225 S.ATPAECNLAQVAA.I 83. 83 / 1 0 1257.42490 0.3192 1.2688 517.4 16/40 SO_3037 L.DIGIGEVNRKR.W 1. 0 SO_0485 NosL-like copper chaperone 2. 0 SO_4446 ABC molybdenum transporter, ATPase subunit, ModC-like 3. 0 SO_2214 pseudogene: glucose/galactose transporter, GluP, frameshift =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2629.2629.2.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2629.2629.2.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 03:10 PM, 0.3 sec. on pnode17.emsl.pnl.gov (M+H)+ mass = 1218.39400 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO total inten = 5921.1, lowest Sp = 236.0, # matched peptides = 76870 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 1 0 1218.34230 0.0000 3.1558 860.0 15/20 SO_3222 K.LSTQAGKDELR.Q 2. 2 / 2 0 1218.51332 0.2421 2.3918 720.6 14/20 SO_3735 F.FASILSVVLLR.F 3. 3 / 6 0 1218.47558 0.3088 2.1812 544.9 12/20 SO_0297 L.MIGQAPNSMLR.D 4. 4 / 4 0 1219.24894 0.3610 2.0167 577.3 14/20 SO_1924 S.DTARGGENWGR.L 5. 5 / 8 0 1219.28393 0.3845 1.9424 532.7 13/24 SO_3514 N.KSSQADIAEGGVG.G 6. 6 / 12 0 1218.49522 0.4251 1.8142 467.9 11/20 SO_3895 G.DSKVAVMAKRI.R 7. 7 /137 0 1218.42704 0.4258 1.8120 307.7 9/18 SO_4321 P.QIEEVAIFLR.Q 8. 8 /285 0 1219.44007 0.4304 1.7974 266.6 9/20 SO_1461 K.SLSGLICKQNR.A 9. 9 /133 0 1218.45377 0.4347 1.7840 311.1 10/20 SO_1375 E.MQLGANPAFLR.Q 10. 10 /308 0 1218.34553 0.4389 1.7707 264.1 10/20 SO_0174 G.LSTLTERAGNR.P 1. 0 SO_3222 flagellar basal body protein, FliL 2. 0 SO_3735 monofunctional biosynthetic peptidoglycan transglycosylase 3. 0 SO_0297 lipoprotein =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2629.2629.3.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2629.2629.3.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 02:50 PM, 0.5 sec. on pnode20.emsl.pnl.gov (M+H)+ mass = 1827.08700 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO total inten = 5938.1, lowest Sp = 186.2, # matched peptides = 72056 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 /328 0 1830.07280 0.0000 1.7992 202.0 16/72 SO_1599 T.ASKLLSDALGLGGAQLSLD.A 2. 2 /446 0 1829.26720 0.0796 1.6560 190.9 13/56 SO_3175 T.SKVWKRLSVLPVFLR.S 3. 3 /322 0 1829.11476 0.1031 1.6137 202.5 14/64 SO_0572 R.CVQVTVENGIANVVLNR.P 4. 4 /263 0 1828.14874 0.1099 1.6014 210.2 15/60 SO_4170 D.WLINCIGMLHTEDKGP.E 5. 5 / 11 0 1826.05805 0.1381 1.5506 334.7 18/64 SO_1744 G.ATESLPISMIASDELFT.T 6. 6 /269 0 1830.03935 0.1602 1.5109 209.2 13/56 SO_2133 I.DSNEKARELQRTLRL.I 7. 7 / 43 0 1829.22237 0.1858 1.4649 276.4 17/60 SO_4800 N.NILNKAFQSAIRIVKL.Q 8. 8 /180 0 1828.96200 0.1888 1.4595 223.7 16/64 SO_4613 M.DNLAIADAFSPFQGQHP.S 9. 9 /304 0 1829.04828 0.1915 1.4547 204.8 14/56 SO_4379 Q.LIYWPEQSIRSHLEG.G 10. 10 /232 0 1828.06182 0.1945 1.4493 214.9 15/64 SO_1872 S.LHIVALYSGNDRAEIVG.P 275. 274 / 1 0 1828.01546 0.5653 0.7822 433.1 22/64 SO_3275 L.YVPTHSNTTAEVINAPI.A 1. 0 SO_1599 multi-domain beta-ketoacyl synthase (PfaC) 2. 0 SO_3175 asparagine synthase, glutamine-hydrolyzing, WbpS 3. 0 SO_0572 enoyl-CoA hydratase/isomerase family protein =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2630.2630.2.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2630.2630.2.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 01:18 PM, 0.3 sec. on pnode22.emsl.pnl.gov (M+H)+ mass = 956.42100 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO total inten = 5107.2, lowest Sp = 217.3, # matched peptides = 71600 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 /101 0 959.20828 0.0000 1.5495 297.0 10/16 SO_0425 A.GKLLSLTVK.V 2. 2 /141 0 956.07667 0.0067 1.5391 279.9 9/14 SO_1602 G.FIAKDYAQ.L 3. 3 /312 0 955.00563 0.0091 1.5354 239.0 9/14 SO_1612 G.WGDTAYNK.I 4. 4 / 84 0 958.13401 0.0627 1.4525 302.3 10/16 SO_0352 S.IALKAELAE.K 5. 5 / 67 0 955.04708 0.0652 1.4485 312.8 10/16 SO_3787 K.SATSLYANK.L 6. 6 /405 0 955.94879 0.0720 1.4380 228.1 8/14 SO_1896 A.QNDEHALE.L 7. 7 /365 0 958.09410 0.0736 1.4355 232.8 9/18 SO_0354 I.AIGNIVGSNI.F 8. 8 / 12 0 956.07667 0.0798 1.4260 392.6 11/16 SO_1185 D.FIAYKGEAG.A 9. 9 /221 0 955.13181 0.0837 1.4199 257.2 10/16 SO_3741 L.FIFSLAGLS.K 10. 10 /132 0 955.00394 0.1071 1.3835 282.7 9/14 SO_2099 E.ENLEHALE.T 38. 38 / 1 0 957.01829 0.2109 1.2227 521.0 11/14 SO_4456 Y.FSPEYDAK.A 1. 0 SO_0425 pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetylt 2. 0 SO_1602 multi-domain beta-ketoacyl synthase (PfaA) 3. 0 SO_1612 conserved domain lipoprotein =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2630.2630.3.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2630.2630.3.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 02:43 PM, 0.4 sec. on pnode19.emsl.pnl.gov (M+H)+ mass = 1434.12700 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO total inten = 5155.2, lowest Sp = 224.9, # matched peptides = 73485 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 9 0 1433.42524 0.0000 1.7660 378.9 18/44 SO_0404 G.SRDHDNTFNQAQ.L 2. 2 / 24 0 1434.61923 0.0635 1.6539 348.0 17/48 SO_2758 S.DILIRTGGDEFVV.I 3. 3 / 19 0 1435.67064 0.0959 1.5967 353.5 18/48 SO_0777 Q.TMLNAPKAEFLAE.L 4. 4 /294 0 1433.63770 0.1323 1.5324 245.2 15/44 SO_3258 L.VNERIQGNKIYV.S 5. 5 / 21 0 1435.65683 0.1359 1.5260 351.1 18/48 SO_2411 N.GRKGIIDAYKTGR.G 6. 6 /128 0 1436.64159 0.1798 1.4484 276.1 16/44 SO_3090 S.RDQVINHILTQV.A 7. 7 / 3 0 1436.68150 0.1880 1.4339 458.0 19/48 SO_4030 V.RKIVLYGSGKDSI.A 8. 8 / 26 0 1434.60129 0.1898 1.4309 345.8 18/48 SO_2047 T.WQSMPVPFEANGA.L 9. 9 /183 0 1431.66018 0.1927 1.4256 263.8 16/48 SO_2055 R.FAIYLPPEAANKP.V 10. 10 /306 0 1432.68962 0.1931 1.4249 242.8 13/48 SO_4637 R.LDVGILRFGEISL.N 203. 202 / 1 0 1434.49136 0.5280 0.8335 488.7 21/56 SO_2469 K.TNDAGSNLGNIIGTS.G 1. 0 SO_0404 zinc dependent metalloprotease domain lipoprotein 2. 0 SO_2758 signalling protein with GGDEF domain 3. 0 SO_0777 2-octaprenyl-6-methoxyphenol hydroxylase, UbiH =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2631.2631.1.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2631.2631.1.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 01:18 PM, 0.3 sec. on pnode22.emsl.pnl.gov (M+H)+ mass = 818.55400 ~ 3.0000 (+1), fragment tol = 0.0000 , AVG/MONO total inten = 2647.5, lowest Sp = 56.2, # matched peptides = 87077 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 62 0 818.89840 0.0000 1.5515 85.3 7/14 SO_3343 R.GSVADTIR.D 2. 2 / 28 0 818.94000 0.1573 1.3074 100.3 7/16 SO_2626 F.LFAGPTGVG.K 3. 3 /368 0 817.87050 0.2553 1.1555 56.8 5/12 SO_2865 A.QNADTLR.K 4. 4 / 71 0 817.91041 0.2608 1.1468 83.3 6/14 SO_3991 L.KDALKADG.T 5. 5 /114 0 817.95031 0.2676 1.1363 78.2 6/14 SO_1159 E.SLIDTVLG.L 6. 6 / 10 0 817.86404 0.2824 1.1134 111.8 7/14 SO_0187 Q.DVVDELAG.Y 7. 7 /110 0 815.89451 0.2826 1.1131 78.7 6/14 SO_0930 T.AEQLANVA.K 8. 8 / 1 0 816.02393 0.2883 1.1042 160.5 8/14 SO_1795 R.AKKVLSVA.V 9. 9 / 32 0 817.86404 0.3134 1.0652 98.0 7/14 SO_1530 Q.EIADGAIE.I 10. 10 / 5 0 815.93765 0.3253 1.0469 126.1 8/16 SO_0560 G.AAGINLSAV.A 1. 0 SO_3343 expressed lipoprotein 2. 0 SO_2626 ATP-dependent Clp protease, ATP-binding subunit (ClpA) 3. 0 SO_2865 L-lysine exporter, LysE family =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2632.2632.2.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2632.2632.2.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 09:32 AM, 0.3 sec. on pnode18.emsl.pnl.gov (M+H)+ mass = 1178.08600 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO total inten = 6135.0, lowest Sp = 194.0, # matched peptides = 74476 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 2 0 1178.40605 0.0000 1.5155 491.1 13/20 SO_2357 G.RILSYTLAGAL.V 2. 2 / 46 0 1177.37815 0.0216 1.4828 295.1 10/18 SO_2109 V.LRQSIFTAQL.P 3. 3 / 28 0 1178.32300 0.0544 1.4330 321.2 11/22 SO_0066 L.SNKIKAAFGGNA.A 4. 4 / 3 0 1178.35968 0.0560 1.4307 478.1 13/20 SO_0839 G.LVGEGYDIAIK.Y 5. 5 /113 0 1179.35091 0.0687 1.4115 259.6 9/20 SO_1907 L.ANGSLHPLELK.E 6. 6 / 62 0 1177.33501 0.0947 1.3720 284.5 10/18 SO_2064 L.LESLHQISLH.Q 7. 7 /107 0 1179.22472 0.0980 1.3669 260.8 11/20 SO_2790 Q.ANGLSHEKAHD.A 8. 8 /199 0 1179.39081 0.1063 1.3544 234.0 10/20 SO_0365 V.ASIATQFVTLK.F 9. 9 / 81 0 1178.31977 0.1459 1.2944 272.3 9/20 SO_3551 Y.AKGDAKAFEQL.Y 10. 10 /185 0 1178.47269 0.1533 1.2831 237.3 9/22 SO_0980 K.MVVLGAAHAPVL.G 308. 306 / 1 0 1177.33024 0.6478 0.5337 606.7 14/20 SO_1723 L.SIAGAIYTAYF.M 1. 0 SO_2357 conserved hypothetical inner membrane protein 2. 0 SO_2109 expressed peptidoglycan-binding protein of unknown function 3. 0 SO_0066 expressed protein of unknown function =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2632.2632.3.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2632.2632.3.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 03:10 PM, 0.4 sec. on pnode17.emsl.pnl.gov (M+H)+ mass = 1766.62500 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO total inten = 6135.0, lowest Sp = 237.8, # matched peptides = 71353 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 /246 0 1764.14223 0.0000 1.8327 268.7 18/72 SO_0508 T.GLALSLLGALLIGGLAVPD.W 2. 2 / 4 0 1767.02057 0.1315 1.5917 476.6 20/60 SO_4008 R.QLNESSSHGMAYLILC.K 3. 3 /141 0 1765.02431 0.1512 1.5557 300.6 18/68 SO_2073 N.VCGITEIYQVGGAQAIAA.L 4. 4 / 12 0 1766.14172 0.1701 1.5209 405.8 20/64 SO_3807 A.AMHQGTDILAGLLIAKL.Y 5. 5 /103 0 1765.04394 0.1782 1.5061 312.1 18/60 SO_1571 P.LKDTLGVELGEQHVLL.P 6. 6 /313 0 1766.04009 0.1794 1.5039 259.4 17/56 SO_2333 A.QFLLKNLQRSGTGFR.W 7. 7 /264 0 1767.00029 0.1814 1.5003 265.8 16/56 SO_1718 H.EIGMQKGNYSIERLQ.E 8. 8 /258 0 1765.05686 0.1869 1.4901 266.5 16/56 SO_1055 V.AVARDITKHKLAERR.Q 9. 9 /316 0 1768.00792 0.1878 1.4886 259.3 16/60 SO_2715 K.KSNNKSSIFTISLTRA.P 10. 10 /235 0 1766.94350 0.1913 1.4822 271.7 16/52 SO_0843 L.FEHSAREILGQWHR.L 22. 22 / 1 0 1764.10126 0.2381 1.3963 570.0 24/68 SO_3562 A.SLIGLAVGSLIDMGGTMQ.L 1. 0 SO_0508 expressed protein 2. 0 SO_4008 conserved hypothetical protein 3. 0 SO_2073 histidinol dehydrogenase, HisD =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2633.2633.1.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2633.2633.1.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 02:43 PM, 0.3 sec. on pnode19.emsl.pnl.gov (M+H)+ mass = 936.38900 ~ 3.0000 (+1), fragment tol = 0.0000 , AVG/MONO total inten = 3940.7, lowest Sp = 99.1, # matched peptides = 71575 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 40 0 936.98861 0.0000 1.9713 158.4 7/16 SO_0248 K.AYGSTNPIN.I 2. 2 / 52 0 936.09013 0.3353 1.3102 151.4 8/16 SO_2536 A.LATGAYARI.R 3. 3 /186 0 936.13544 0.3413 1.2985 120.4 7/16 SO_3288 R.SPTGVRGMM.M 4. 4 / 26 0 939.08973 0.3603 1.2610 167.4 8/16 SO_1929 E.VADGTDMMV.L 5. 5 /152 0 937.01042 0.3690 1.2438 125.3 7/18 SO_3642 S.ASAIDTGMGN.I 6. 6 /118 0 935.10213 0.3737 1.2346 132.7 6/14 SO_3306 G.ERGLTLVF.D 7. 7 /329 0 936.04376 0.3990 1.1848 105.2 7/16 SO_4317 L.PSTTGNVLF.N 8. 8 /173 0 935.09890 0.4010 1.1808 122.0 6/14 SO_1141 I.LKTDTPIF.G 9. 9 / 74 0 937.02852 0.4460 1.0920 142.8 7/16 SO_2446 D.FSGPTSLDL.E 10. 10 / 13 0 937.15794 0.4606 1.0634 192.2 8/16 SO_3855 G.PAILEAPLI.N 230. 230 / 1 0 936.04376 0.7225 0.5470 276.9 8/14 SO_3108 L.FIDTVNLN.V 1. 0 SO_0248 ribosomal protein S5, RpsE 2. 0 SO_2536 oxidoreductase, acyl-CoA dehydrogenase family 3. 0 SO_3288 transglycosylase, Slt family =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2634.2634.2.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2634.2634.2.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 01:55 PM, 0.3 sec. on pnode21.emsl.pnl.gov (M+H)+ mass = 1033.98300 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO total inten = 2833.3, lowest Sp = 128.4, # matched peptides = 78369 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 3 0 1032.13307 0.0000 1.4576 282.0 12/18 SO_0779 L.RDAGTDKLVG.L 2. 2 / 96 0 1031.10041 0.0850 1.3338 174.7 9/16 SO_4696 A.DWPTENIVG.L 3. 3 / 88 0 1031.27942 0.1451 1.2462 178.3 8/14 SO_2365 K.RLIFVLNR.N 4. 4 / 76 0 1031.10364 0.1557 1.2307 180.8 11/16 SO_3805 H.SSEVTKGWH.A 5. 5 /303 0 1031.06850 0.1575 1.2281 141.9 8/14 SO_4211 A.RRDAENNR.P 6. 6 /199 0 1031.18822 0.1651 1.2170 156.7 8/14 SO_3961 T.KLKEDELR.D 7. 7 /230 0 1032.20617 0.1730 1.2055 151.7 8/14 SO_3779 L.RRADMLNR.L 8. 8 /107 0 1032.23962 0.1812 1.1935 172.7 9/16 SO_4149 M.TTVPVMDLR.A 9. 9 /443 0 1031.19468 0.1821 1.1922 132.0 9/14 SO_2396 V.RDVKTQKR.R 10. 10 /208 0 1031.10364 0.1919 1.1779 155.4 8/14 SO_1915 K.DWTPDQIR.S 50. 50 / 1 0 1031.18822 0.3467 0.9523 308.6 10/16 SO_2773 V.TANLTELIR.G 1. 0 SO_0779 glycine cleavage system T protein (GcvT) 2. 0 SO_4696 methyladenine glycosylase 3. 0 SO_2365 expressed lipoprotein =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2634.2634.3.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2634.2634.3.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 04:52 PM, 0.9 sec. on P1 (M+H)+ mass = 1550.47100 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO total inten = 2835.8, lowest Sp = 131.4, # matched peptides = 71415 # amino acids = 1389695, # proteins = 4198, D:\Database\ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 /388 0 1552.67754 0.0000 2.0159 138.5 14/48 SO_0404 K.LEQANDKRHGDLR.Y 2. 2 / 12 0 1550.74146 0.1036 1.8070 249.1 19/52 SO_3872 N.VLTGAISNKYVDNR.S 3. 3 / 10 0 1552.67277 0.1072 1.7998 253.6 18/48 SO_0292 I.ITFHPEASEHIDR.T 4. 4 / 61 0 1551.81896 0.1460 1.7216 191.1 14/48 SO_4182 G.RIEVRVVEPGQLR.M 5. 5 /300 0 1552.68489 0.1474 1.7187 145.4 14/52 SO_3196 K.SSDISSYFIDSTMV.G 6. 6 /396 0 1548.94358 0.1854 1.6422 138.0 14/48 SO_2150 P.WTLGICAICLLWR.I 7. 7 /150 0 1551.55198 0.1862 1.6405 166.6 18/60 SO_2214 A.SSINTSSHTTSVSGAD.N 8. 8 /251 0 1552.84686 0.2043 1.6041 151.4 16/56 SO_0640 S.RSSLPVVGAGQVLIR.V 9. 9 /241 0 1552.88354 0.2134 1.5857 152.4 15/56 SO_4519 M.PLSALAISLLLGLDR.E 10. 10 /356 0 1549.83974 0.2500 1.5119 141.3 13/48 SO_4358 S.KKIEAYSLTLLNR.T 199. 199 / 1 0 1549.85832 0.6141 0.7780 319.7 19/56 SO_4223 N.GKTSVKEMIATILSA.K 1. 0 SO_0404 zinc dependent metalloprotease domain lipoprotein 2. 0 SO_3872 arylsulfate sulfotransferase 3. 0 SO_0292 ribulose-phosphate 3-epimerase,Rpe =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2635.2635.2.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2635.2635.2.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 01:18 PM, 0.3 sec. on pnode22.emsl.pnl.gov (M+H)+ mass = 1294.39800 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO total inten = 6162.4, lowest Sp = 203.2, # matched peptides = 70434 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 1 0 1295.50658 0.0000 1.6680 600.8 14/22 SO_4344 I.LLSSVYDVAKVT.P 2. 2 /152 0 1296.40830 0.0125 1.6471 261.9 11/24 SO_4062 W.SAGGIYQTVLDAT.L 3. 3 / 44 0 1294.39886 0.0228 1.6299 331.5 11/20 SO_2743 K.RNIDDALKHPD.V 4. 4 /124 0 1292.33337 0.0471 1.5894 274.7 11/22 SO_2523 D.DGDIDLTFGNPQ.L 5. 5 /130 0 1294.48191 0.0682 1.5542 271.7 11/22 SO_3033 E.IINVVGAKDLHD.K 6. 6 / 48 0 1291.62771 0.0911 1.5161 328.2 12/22 SO_3747 V.SQIGMFLVLGLL.L 7. 7 /284 0 1294.49223 0.1126 1.4801 232.0 10/22 SO_0737 E.GMPVNMRTHGHG.Q 8. 8 / 31 0 1293.49561 0.1355 1.4419 348.4 13/22 SO_1942 N.FPEAALPAIINH.H 9. 9 /332 0 1293.37112 0.1427 1.4300 224.0 10/18 SO_0440 S.RADSWYFPHN.E 10. 10 /188 0 1294.42390 0.1431 1.4292 252.8 11/22 SO_3759 Q.SLASCRRTNSQA.A 1. 0 SO_4344 threonine dehydratase, IlvA 2. 0 SO_4062 thiosulfate reductase catalytic subunit, PhsA 3. 0 SO_2743 acetyl-coenzyme A synthetase, Acs =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2635.2635.3.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2635.2635.3.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 02:50 PM, 0.5 sec. on pnode20.emsl.pnl.gov (M+H)+ mass = 1941.09400 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO total inten = 6162.4, lowest Sp = 198.5, # matched peptides = 71281 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 /258 0 1940.15072 0.0000 1.8721 224.9 15/60 SO_2075 F.STYWKNGWIDAKNRSL.S 2. 2 /336 0 1941.38616 0.0797 1.7229 214.3 17/72 SO_3600 S.LLAELGIKVAYTPLGIVVA.M 3. 3 /182 0 1940.36213 0.1032 1.6788 234.8 19/64 SO_2406 A.QSVLLYVVRCLYSMPPA.H 4. 4 / 14 0 1943.38396 0.1156 1.6557 319.7 18/72 SO_3385 V.AISKVKPLLMSSAKALDVA.S 5. 5 / 21 0 1940.03666 0.1169 1.6533 309.3 18/64 SO_3106 N.QGNKDYEYYNGTSMATP.H 6. 6 /345 0 1939.41960 0.1282 1.6321 212.8 16/64 SO_1104 M.MITVWACAFPAMFVGMY.N 7. 7 / 3 0 1940.16607 0.1317 1.6254 390.6 20/68 SO_2916 K.SPTVNPLEPFDMAHAEAL.I 8. 8 / 35 0 1940.19371 0.1400 1.6100 296.6 21/76 SO_4230 G.SKAVRSSHGLLTTVAVGAQG.E 9. 9 /244 0 1941.32831 0.1444 1.6017 226.4 17/68 SO_4243 A.GAAVRIPLSMLGFFQYIG.P 10. 10 / 52 0 1941.18016 0.1705 1.5528 274.6 20/68 SO_2934 C.LSAEGKPLINGRWKAQGD.S 410. 410 / 1 0 1938.25763 0.7427 0.4818 452.4 20/68 SO_4598 M.TLDGIINQLQQTVKVPGL.T 1. 0 SO_2075 hypothetical protein 2. 0 SO_3600 ABC sulfate transporter, inner membrane subunit, CysT_1 3. 0 SO_2406 aspartate aminotransferase, AspC_2 =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2636.2636.2.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2636.2636.2.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 03:10 PM, 0.3 sec. on pnode17.emsl.pnl.gov (M+H)+ mass = 799.92900 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO total inten = 4496.5, lowest Sp = 177.6, # matched peptides = 72023 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 4 0 798.90709 0.0000 1.7333 391.0 10/14 SO_4608 G.QAIPSVSP.G 2. 2 /363 0 801.90775 0.0472 1.6515 184.6 9/14 SO_3678 H.DIAADIAI.I 3. 3 / 2 0 800.92621 0.0915 1.5746 412.0 10/14 SO_1102 S.SLLGARSP.Q 4. 4 / 94 0 800.88308 0.1340 1.5011 245.9 9/14 SO_3783 T.EAAVARSP.K 5. 5 /363 0 801.86784 0.1379 1.4943 184.6 9/14 SO_2114 M.DLAANLAN.E 6. 6 / 45 0 798.99660 0.1392 1.4920 281.6 8/12 SO_2902 A.TPLKRAL.A 7. 7 /115 0 800.92621 0.1474 1.4777 237.8 9/12 SO_1198 L.INDVRAL.L 8. 8 /337 0 801.90775 0.1598 1.4563 187.7 8/12 SO_2471 D.DLEQLAL.C 9. 8 /337 0 801.95088 0.1598 1.4563 187.7 8/12 SO_1893 I.DLEKLAL.A 10. 9 / 9 0 800.96612 0.1718 1.4355 356.3 10/14 SO_4100 N.LSLGAINI.I 17. 16 / 1 0 800.02127 0.2214 1.3495 469.6 11/14 SO_1290 A.ISLGLIAI.A 1. 0 SO_4608 cytochrome c oxidase assembly protein (CoxG) 2. 0 SO_3678 FAD-dependent oxidoreductase 3. 0 SO_1102 TonB-dependent receptor C-terminal region domain lipoprotein =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2636.2636.3.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2636.2636.3.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 01:18 PM, 0.4 sec. on pnode22.emsl.pnl.gov (M+H)+ mass = 1199.39100 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO total inten = 4522.0, lowest Sp = 190.3, # matched peptides = 73436 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 /365 0 1200.43199 0.0000 1.4560 200.7 13/40 SO_0409 T.TALFFSCQVLA.N 2. 2 / 55 0 1197.45097 0.0080 1.4444 264.4 15/40 SO_0154 L.IAVIINAIWSP.P 3. 3 /137 0 1201.44439 0.0173 1.4309 232.3 15/40 SO_0055 S.KSKLIQARSVA.N 4. 4 /296 0 1197.41906 0.0222 1.4238 208.3 15/40 SO_3954 M.QRRAALARAIA.L 5. 5 /286 0 1196.57106 0.0585 1.3709 209.4 15/44 SO_1434 I.PIIAILGLAMLA.I 6. 6 / 19 0 1200.36689 0.0730 1.3498 292.9 15/44 SO_3659 L.TIEAVINGLAQA.K 7. 7 / 33 0 1197.36146 0.0748 1.3471 280.8 15/40 SO_4047 S.PELVALSAYAY.W 8. 8 / 60 0 1198.52031 0.0749 1.3470 259.1 16/44 SO_4475 V.VSVVAIVLTLAL.V 9. 9 / 3 0 1198.26472 0.0798 1.3398 356.5 18/44 SO_3899 I.LADADSDGLHIA.T 10. 10 / 72 0 1199.42203 0.1006 1.3096 254.5 16/44 SO_0336 A.VIQDLGVASLLA.D 404. 402 / 1 0 1197.36623 0.6410 0.5228 436.0 17/48 SO_4118 S.NGTAILGLGNLGP.L 1. 0 SO_0409 thioredoxin family protein 2. 0 SO_0154 expressed inner membrane protein 3. 0 SO_0055 conserved protein =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2637.2638.2.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2637.2638.2.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 01:55 PM, 0.4 sec. on pnode21.emsl.pnl.gov (M+H)+ mass = 988.68800 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO total inten = 4542.1, lowest Sp = 150.2, # matched peptides = 81675 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 /437 0 989.17161 0.0000 1.7658 152.7 8/18 SO_0345 E.LAQAGADMVL.Y 2. 2 / 18 0 989.30425 0.0078 1.7520 246.0 9/16 SO_4726 A.GKKKAIKLC.L 3. 3 / 95 0 989.21475 0.0137 1.7416 201.2 8/16 SO_4682 L.LAQKALECL.A 4. 4 / 71 0 991.03782 0.1443 1.5109 208.6 8/16 SO_3632 E.NAETVNKQS.V 5. 5 /112 0 990.05151 0.1449 1.5099 197.2 8/14 SO_A0089 Y.WQQALTEN.E 6. 6 /154 0 988.08030 0.1709 1.4641 187.1 9/16 SO_2162 L.GVRVVNTDQ.S 7. 7 /193 0 986.14422 0.1833 1.4421 181.9 10/16 SO_1791 R.LNELGVVLE.D 8. 8 /295 0 989.10666 0.1841 1.4408 165.6 8/16 SO_2433 V.GQEVTLVGW.V 9. 9 /262 0 989.06352 0.1911 1.4283 169.3 9/18 SO_3412 W.GAPSEANFPV.C 10. 10 /425 0 989.21475 0.2023 1.4085 153.4 8/18 SO_1682 A.AGANVVITML.P 48. 48 / 1 0 991.03459 0.3406 1.1644 383.6 11/16 SO_3135 L.IDDTAIQSQ.G 1. 0 SO_0345 2-methylisocitrate lyase,PrpB 2. 0 SO_4726 formamidopyrimidine-DNA glycosylase (MutM) 3. 0 SO_4682 glycosyl transferase, group 1 family protein =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2637.2638.3.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2637.2638.3.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 02:43 PM, 0.4 sec. on pnode19.emsl.pnl.gov (M+H)+ mass = 1482.52800 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO total inten = 4601.4, lowest Sp = 154.5, # matched peptides = 70522 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 23 0 1485.49200 0.0000 1.9184 260.6 17/56 SO_2643 L.DAGVLGDPDNVSDNP.L 2. 2 /216 0 1482.88191 0.0856 1.7541 181.7 15/48 SO_0057 Y.MGRLGPLMLAYFL.A 3. 3 / 34 0 1483.80480 0.1059 1.7153 250.1 16/52 SO_3331 N.LALRATMSVASHIL.M 4. 4 / 85 0 1483.77653 0.1064 1.7143 212.5 16/52 SO_4667 E.WAVASEIPVLALLT.K 5. 5 / 1 0 1484.79449 0.1264 1.6759 338.5 16/44 SO_3611 A.GVWQRPLLRLDM.G 6. 6 / 66 0 1484.71969 0.1314 1.6663 220.1 16/52 SO_4283 I.VVGEEIVELVAQAK.I 7. 7 / 37 0 1484.63665 0.1356 1.6582 246.1 17/56 SO_2596 K.LGNELTPLGAEKAGN.A 8. 8 /466 0 1483.76166 0.1468 1.6368 156.1 13/48 SO_0154 A.INSMAKVLTQHLQ.A 9. 9 / 63 0 1482.71026 0.1517 1.6274 222.1 15/48 SO_1924 V.NNAIVLVDRINQL.R 10. 10 / 15 0 1481.67913 0.1523 1.6263 270.4 17/48 SO_1055 V.ILLERVDSAHNTL.L 1. 0 SO_2643 oxidoreductase, FAD-binding 2. 0 SO_0057 potassium uptake protein, TrkB-like 3. 0 SO_3331 ParA-family protein =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2640.2640.2.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2640.2640.2.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 02:50 PM, 0.3 sec. on pnode20.emsl.pnl.gov (M+H)+ mass = 1050.17700 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO total inten = 6849.7, lowest Sp = 343.7, # matched peptides = 73310 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 1 0 1050.14686 0.0000 3.1122 1358.6 15/18 SO_0933 K.AYQSGALDPK.I 2. 2 / 28 0 1051.26644 0.3344 2.0715 655.6 11/16 SO_2754 S.MLNELSRGM.E 3. 3 /135 0 1050.06212 0.3776 1.9370 483.3 10/16 SO_1061 R.RSNELQSSE.Q 4. 4 / 46 0 1050.10203 0.3941 1.8857 594.5 11/18 SO_2323 A.AATDLDTQSK.L 5. 5 / 82 0 1050.14855 0.4085 1.8410 549.1 11/18 SO_1787 A.TAYIGWNPGA.G 6. 6 / 51 0 1050.18677 0.4308 1.7714 588.7 11/16 SO_1868 G.FLPLTDKTD.A 7. 7 /150 0 1050.14363 0.4508 1.7093 471.2 10/16 SO_4221 K.ENADIFVLE.L 8. 8 / 50 0 1050.27474 0.4762 1.6302 589.3 11/16 SO_4364 P.FLTSLPFKP.T 9. 9 /178 0 1049.22874 0.4790 1.6215 449.0 10/16 SO_3288 V.YREGMPAPK.D 10. 10 /349 0 1050.10849 0.4852 1.6021 373.3 9/16 SO_1646 I.RSSIRSTDQ.A 1. 0 SO_0933 fructose-bisphosphate aldolase, class II, Calvin cycle subtype,Fba 2. 0 SO_2754 sodium-type flagellar protein, MotY 3. 0 SO_1061 TPR domain protein =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2640.2640.3.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2640.2640.3.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 02:43 PM, 0.4 sec. on pnode19.emsl.pnl.gov (M+H)+ mass = 1574.76100 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO total inten = 6862.5, lowest Sp = 316.9, # matched peptides = 73460 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 50 0 1575.81596 0.0000 2.1277 478.3 20/60 SO_3963 V.AREKMGSTGIGNGIAI.P 2. 2 /246 0 1575.87720 0.1354 1.8395 363.5 17/52 SO_0862 L.IKINKAFSEKGINI.A 3. 3 / 23 0 1573.82293 0.1367 1.8367 523.0 18/52 SO_4556 H.ISQSALSKSLNRLR.D 4. 4 /248 0 1573.93440 0.1673 1.7718 362.9 16/48 SO_A0089 I.KVMGAAEKRRWKL.L 5. 5 / 3 0 1573.77011 0.1673 1.7718 724.1 22/56 SO_2635 P.LSESAIALLDAIKDN.F 6. 6 /410 0 1575.74519 0.1832 1.7379 329.6 16/48 SO_1983 E.MLDAEISYWQCTD.A 7. 7 /235 0 1573.85961 0.1833 1.7376 366.0 19/64 SO_1949 E.ISITAGTIAGAGKITAK.V 8. 8 /114 0 1576.86090 0.1999 1.7023 417.0 18/52 SO_4718 L.DEIGEMPLKMQTAL.L 9. 9 /178 0 1574.00930 0.2101 1.6807 385.2 18/52 SO_3184 K.IIEMLSKGSLKKLI.E 10. 10 /489 0 1573.79530 0.2151 1.6699 318.0 16/48 SO_1254 P.EVMEVVERWADLP.Y 57. 57 / 1 0 1576.77415 0.3510 1.3808 1070.1 24/52 SO_0743 T.LLDFAINDIADWLG.M 1. 0 SO_3963 PTS system nitrogen-specific IIA component, PtsN 2. 0 SO_0862 D-3-phosphoglycerate dehydrogenase, SerA 3. 0 SO_4556 transcriptional regulator, LysR family =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2641.2641.2.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2641.2641.2.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 09:32 AM, 0.4 sec. on pnode18.emsl.pnl.gov (M+H)+ mass = 1004.02000 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO total inten = 5610.8, lowest Sp = 211.3, # matched peptides = 81505 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 41 0 1004.18304 0.0000 1.9859 331.6 10/16 SO_1330 G.QLIEMELGA.T 2. 2 / 29 0 1004.20760 0.0838 1.8195 351.5 12/18 SO_2738 S.LLQGFVAKGA.I 3. 3 / 12 0 1002.14534 0.1172 1.7531 397.7 10/16 SO_0547 A.KIALGYSYS.F 4. 4 /365 0 1003.26275 0.1252 1.7373 223.7 9/18 SO_2822 E.KLLAFIGIGA.D 5. 5 / 7 0 1004.12609 0.1277 1.7323 410.3 12/20 SO_3539 Y.GKSVGGRSKGA.I 6. 6 /406 0 1003.24142 0.1278 1.7321 219.7 10/20 SO_4601 K.SLLGGAMIIAG.T 7. 7 / 42 0 1004.20437 0.1619 1.6643 330.7 10/18 SO_3827 M.ALGLAGLFIE.A 8. 8 /216 0 1004.07650 0.1802 1.6280 245.2 10/18 SO_4699 L.SGIGLDDAQK.L 9. 9 /175 0 1003.13164 0.1818 1.6249 255.7 9/16 SO_4396 L.SNALVEELK.A 10. 10 / 48 0 1002.23485 0.1899 1.6088 320.2 10/16 SO_4163 A.KLANAPFIK.V 227. 227 / 1 0 1001.12067 0.4901 1.0127 621.6 11/14 SO_2756 S.ELIAFDHR.M 1. 0 SO_1330 DNA mismatch repair protein (MutH) 2. 0 SO_2738 biotin synthesis protein, BioC 3. 0 SO_0547 conserved hypothetical outer membrane protein =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2641.2641.3.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2641.2641.3.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 09:32 AM, 0.4 sec. on pnode18.emsl.pnl.gov (M+H)+ mass = 1505.52600 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO total inten = 5634.4, lowest Sp = 247.6, # matched peptides = 74025 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 37 0 1505.70392 0.0000 2.1980 371.9 19/48 SO_4509 A.KDIPHNAPTEVKR.T 2. 2 / 8 0 1505.71604 0.0650 2.0552 491.7 19/48 SO_0424 G.KLLQLMEETVDGE.Y 3. 3 /402 0 1504.67448 0.1601 1.8461 258.1 15/48 SO_2731 D.LGANYQQRPSAWI.E 4. 4 / 94 0 1505.70069 0.2015 1.7551 329.2 15/44 SO_1489 L.IQDYQQRLAKLE.Q 5. 5 /155 0 1506.66412 0.2208 1.7127 302.7 16/60 SO_1894 G.PGSDAIDAMGSKSAAK.A 6. 6 / 3 0 1506.79200 0.2307 1.6910 549.9 20/48 SO_1811 Q.ELLMELKQFAGNL.L 7. 7 /454 0 1505.78866 0.2349 1.6816 253.0 15/52 SO_2822 E.KLLAFIGIGADHHI.P 8. 8 / 31 0 1503.64643 0.2502 1.6481 389.4 18/48 SO_3866 V.ALEGNSRKEKSRQ.I 9. 9 /172 0 1505.61441 0.2550 1.6375 295.0 16/48 SO_2114 P.QINKYGHSQETSL.E 10. 10 / 36 0 1505.65924 0.2570 1.6332 374.3 18/48 SO_4732 Q.ALGDKFDIRAFHD.A 43. 43 / 1 0 1504.66956 0.3609 1.4047 576.4 21/60 SO_1952 K.QGGNAIDAAVAVAFSL.A 1. 0 SO_4509 formate dehydrogenase 1, alpha subunit, FdhA_1 2. 0 SO_0424 pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase,A 3. 0 SO_2731 periplasmic glucan biosynthesis protein =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2642.2642.2.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2642.2642.2.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 01:55 PM, 0.3 sec. on pnode21.emsl.pnl.gov (M+H)+ mass = 983.34400 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO total inten = 3658.1, lowest Sp = 140.5, # matched peptides = 66706 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 /318 0 984.13002 0.0000 1.6909 154.5 9/16 SO_4085 E.FPYLTTGGK.Y 2. 2 /195 0 985.16269 0.0907 1.5376 171.9 11/18 SO_4465 D.ANQLIAVAGK.K 3. 3 /164 0 985.11955 0.1238 1.4815 177.4 9/18 SO_3061 L.PSALNGLKGQ.G 4. 4 / 9 0 983.10042 0.1251 1.4795 270.4 10/14 SO_0113 F.DEEHLVIK.P 5. 5 /364 0 983.12393 0.1266 1.4768 150.6 9/18 SO_3706 I.AGTMLAGYAQ.L 6. 6 /385 0 983.22984 0.1274 1.4756 148.3 11/20 SO_0975 I.LAAGILALIAG.T 7. 7 / 23 0 984.04528 0.1390 1.4559 250.7 10/14 SO_2545 L.DIEDHQVK.T 8. 8 /104 0 983.10212 0.1489 1.4391 196.2 10/14 SO_0826 N.FDYNAKPK.A 9. 9 /243 0 984.26097 0.1547 1.4293 164.8 9/18 SO_4174 A.ALAAVGLKLK.E 10. 10 /254 0 983.05406 0.1593 1.4216 163.0 8/14 SO_3337 L.DETEFTLK.M 153. 152 / 1 0 983.14356 0.4221 0.9772 383.6 12/16 SO_1618 Y.LEALALQPQ.A 1. 0 SO_4085 chitinase A, ChiA 2. 0 SO_4465 conserved domain protein 3. 0 SO_3061 DNA topoisomerase III (TopB) =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2642.2642.3.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2642.2642.3.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 03:10 PM, 0.4 sec. on pnode17.emsl.pnl.gov (M+H)+ mass = 1474.51200 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO total inten = 3658.1, lowest Sp = 126.7, # matched peptides = 75050 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 /288 0 1475.76086 0.0000 1.6014 139.6 15/52 SO_1525 L.GKRIALLNFGTTLA.A 2. 2 /481 0 1475.75763 0.0131 1.5804 127.8 14/52 SO_2402 G.IINGKVKGGFTVEL.N 3. 3 / 65 0 1475.67628 0.0146 1.5780 173.8 14/48 SO_0980 P.KSFFQTNPHVAAK.L 4. 4 / 99 0 1476.61467 0.0172 1.5739 164.9 14/48 SO_2126 C.YAYVAPGDQHLEI.I 5. 5 /286 0 1473.56596 0.0175 1.5734 139.9 13/48 SO_2506 P.QTIYVSATPNSYE.L 6. 6 /102 0 1472.71061 0.0720 1.4860 164.1 17/56 SO_4051 L.EVGSFAAVGQPLLAL.V 7. 7 /245 0 1476.64294 0.0739 1.4831 142.7 13/44 SO_2460 P.LMQHQDTVNRYA.A 8. 8 /483 0 1475.73630 0.0929 1.4526 127.8 13/52 SO_1563 Y.QGKVILIVNTASEC.G 9. 9 / 23 0 1474.73513 0.0961 1.4476 201.6 15/44 SO_3786 S.KCHKLINRMSED.I 10. 10 /372 0 1471.76898 0.1077 1.4290 133.6 12/48 SO_1642 F.VKAALLIKQQFPD.I 44. 44 / 1 0 1474.71163 0.2690 1.1707 301.6 15/44 SO_2121 R.EKILQKARENNM.S 1. 0 SO_1525 1-deoxy-D-xylulose-5-phosphate synthase, Dxs 2. 0 SO_2402 ribosomal protein S1, RpsA 3. 0 SO_0980 RNA methyltransferase, TrmA family =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2643.2643.2.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2643.2643.2.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 03:10 PM, 0.4 sec. on pnode17.emsl.pnl.gov (M+H)+ mass = 1433.76400 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO total inten = 6227.9, lowest Sp = 186.2, # matched peptides = 73268 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 /237 0 1436.59522 0.0000 1.7870 219.2 10/24 SO_1699 G.VDTGDNPLHKIIN.Q 2. 2 / 21 0 1436.58876 0.0068 1.7748 329.9 12/26 SO_0984 N.SDGIDPIPPVVTPE.P 3. 3 /340 0 1436.63359 0.0224 1.7469 204.1 10/22 SO_3685 Q.TLIDSKWFTPVE.R 4. 4 / 45 0 1435.65360 0.0514 1.6951 287.9 11/24 SO_4693 I.ITKRSFVEGGNVK.Q 5. 5 / 66 0 1431.68353 0.0594 1.6809 272.8 10/22 SO_3556 L.IENDLDAMRLKL.H 6. 6 / 73 0 1434.55800 0.0594 1.6809 269.0 11/24 SO_4146 Y.QTLVGNNDSQMLN.K 7. 7 / 61 0 1435.63396 0.0638 1.6730 277.4 10/24 SO_0054 G.GGRCNFTNLKVEP.A 8. 8 /204 0 1435.56086 0.0642 1.6723 226.3 11/26 SO_1463 T.ASLATGDFSLEQVP.V 9. 9 /243 0 1435.69350 0.0904 1.6254 217.9 10/24 SO_4016 C.LTTGEHPNLIKVL.A 10. 10 / 24 0 1434.70874 0.0942 1.6186 311.1 12/24 SO_3227 D.AASILKHLEPKQV.Q 21. 21 / 1 0 1436.70346 0.1654 1.4914 510.6 13/22 SO_0670 T.YAHVLNVYMPTK.D 1. 0 SO_1699 transcriptional regulator 2. 0 SO_0984 pseudogene: serine protease, subtilase family, truncation 3. 0 SO_3685 curli production assembly/transport component, CsgG =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2643.2643.3.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2643.2643.3.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 01:18 PM, 0.7 sec. on pnode22.emsl.pnl.gov (M+H)+ mass = 2150.14200 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO total inten = 6227.9, lowest Sp = 184.5, # matched peptides = 71141 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 /133 0 2147.31147 0.0000 1.6064 233.6 18/72 SO_2469 E.FMRTEYDKTNDAGSNLGNI.I 2. 2 /130 0 2148.69998 0.0383 1.5449 234.0 17/68 SO_3128 T.VMKLLDVLVYILVYFTSM.L 3. 3 / 47 0 2148.27119 0.0483 1.5288 274.3 19/76 SO_4645 R.DRDSSGEVIIVDEGGAFSFF.A 4. 4 /411 0 2147.56722 0.0617 1.5073 191.5 18/72 SO_0002 T.INFGSFFASLSMPLLLKNF.G 5. 5 /161 0 2147.46221 0.0661 1.5002 224.8 17/64 SO_2951 T.INKDEVIYPIQRRELPY.Y 6. 6 /437 0 2151.36135 0.0741 1.4874 189.7 15/68 SO_0879 G.KLVLEYSEEEESFAIRHA.D 7. 7 / 32 0 2148.27273 0.0824 1.4740 290.5 19/76 SO_0189 D.SATIAWNQSIDVNVLANDTD.S 8. 8 /495 0 2148.68124 0.0916 1.4593 184.7 19/88 SO_4130 A.ELVIPGGIVVLLGAACLVVAGAL.G 9. 9 /480 0 2151.35981 0.0962 1.4519 186.2 16/76 SO_0842 I.AGFPVLDVEFELTDGAYHAV.D 10. 10 / 18 0 2147.50688 0.0999 1.4459 321.1 20/68 SO_2095 D.DYLKLLSLKLTGRRDNLQ.S 210. 209 / 1 0 2147.33264 0.4766 0.8408 440.1 23/72 SO_2593 I.DRQSSTADIKALEREIQSV.L 1. 0 SO_2469 TonB-dependent receptor protein 2. 0 SO_3128 ABC transporter, ATPase/inner membrane subunit 3. 0 SO_4645 expressed protein =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2644.2644.2.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2644.2644.2.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 01:55 PM, 0.3 sec. on pnode21.emsl.pnl.gov (M+H)+ mass = 903.51100 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO total inten = 2739.5, lowest Sp = 160.3, # matched peptides = 84599 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 25 0 904.00007 0.0000 1.5992 285.7 11/16 SO_4676 R.IVSSGQELA.E 2. 2 /153 0 902.02731 0.0730 1.4825 211.5 9/14 SO_1481 S.IVDDKIAQ.I 3. 3 /128 0 903.01531 0.0824 1.4675 216.9 10/16 SO_0820 G.AQVSGQILS.L 4. 4 /158 0 903.05521 0.0965 1.4449 210.8 9/14 SO_4317 +2 N.IVDDKLTV.G 0 SO_4317 RTX toxin 0 SO_4317 RTX toxin 5. 5 / 75 0 901.08569 0.1052 1.4310 245.9 10/14 SO_2341 D.LTDLVALR.E 6. 6 /201 0 903.01208 0.1371 1.3799 196.7 10/16 SO_0867 L.TVSVSPALE.G 7. 7 /377 0 904.04321 0.1473 1.3637 167.2 9/16 SO_2465 F.ISATAQLTV.S 8. 8 /188 0 903.05521 0.1482 1.3622 199.3 9/14 SO_2185 G.ITLDKAIE.A 9. 9 / 36 0 904.08634 0.1517 1.3567 273.9 11/16 SO_0368 Q.SLVSGKLSI.L 10. 10 / 55 0 903.05844 0.1591 1.3448 260.7 10/14 SO_1405 G.IVKQTADK.I 118. 116 / 1 0 902.02731 0.4147 0.9361 399.9 11/14 SO_1798 G.EAKQLAEL.Q 1. 0 SO_4676 3-deoxy-D-manno-octulosonic-acid (KDO) transferase, KdtA 2. 0 SO_1481 potassium efflux protein, KefC 3. 0 SO_0820 type I secretion membrane fusion protein, HlyD family =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2644.2644.3.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2644.2644.3.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 01:18 PM, 0.4 sec. on pnode22.emsl.pnl.gov (M+H)+ mass = 1354.76200 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO total inten = 2823.8, lowest Sp = 141.5, # matched peptides = 70593 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 75 0 1356.59484 0.0000 1.4686 195.6 14/44 SO_0180 G.PLFSLDLPNARL.L 2. 2 /149 0 1357.66265 0.0252 1.4316 177.5 13/44 SO_3489 K.TLNYIPIPILLS.E 3. 3 / 19 0 1356.54678 0.0378 1.4131 234.4 15/48 SO_3404 A.LVSVATNIIDDPV.A 4. 4 /263 0 1357.55828 0.0425 1.4062 161.1 15/52 SO_2856 F.LAGMAGNSLIESPP.L 5. 5 / 62 0 1357.62105 0.0583 1.3830 200.4 14/44 SO_2255 N.DTLIKNLAELKV.G 6. 6 /423 0 1354.55762 0.0597 1.3809 146.2 14/44 SO_0769 L.VLDVDHNQAMIV.V 7. 7 /381 0 1356.50687 0.1026 1.3180 148.9 14/44 SO_0991 D.DITIDINPADLR.I 8. 8 /101 0 1357.53477 0.1046 1.3150 187.3 15/48 SO_2444 A.ELEAQIQTAIALG.K 9. 9 / 9 0 1356.50687 0.1102 1.3068 250.8 17/52 SO_2886 V.AINTGTNLPSVATP.N 10. 10 / 51 0 1356.67619 0.1167 1.2972 206.5 15/48 SO_2286 L.VIASISLIDLKAL.W 86. 86 / 1 0 1357.54123 0.3236 0.9933 299.9 16/40 SO_3428 Q.VEELVNTQIRR.N 1. 0 SO_0180 S-adenosyl-L-methionine-dependent methyltransferase 2. 0 SO_3489 diguanylate cyclase 3. 0 SO_3404 methyl-accepting chemotaxis protein with PAS / PAC sensory domains =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2645.2645.2.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2645.2645.2.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 02:50 PM, 0.4 sec. on pnode20.emsl.pnl.gov (M+H)+ mass = 1122.19000 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO total inten = 5702.9, lowest Sp = 174.4, # matched peptides = 71604 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 /176 0 1122.42554 0.0000 1.5350 215.5 9/20 SO_0308 A.LLQGIVILVPG.S 2. 2 /116 0 1122.25945 0.0064 1.5253 234.4 10/18 SO_2153 S.VDGITHRLPN.P 3. 3 / 2 0 1120.28346 0.0236 1.4988 466.0 14/20 SO_2742 L.GRGSVFSITVP.L 4. 4 / 27 0 1124.32171 0.0467 1.4633 295.0 10/18 SO_3585 Y.AQALAPIRQR.H 5. 5 / 42 0 1120.30204 0.0505 1.4575 272.6 11/22 SO_4280 F.LVTAASGCLEGV.V 6. 6 / 57 0 1120.28669 0.0861 1.4029 262.2 9/18 SO_3141 N.TLSKIGHINH.Q 7. 7 / 25 0 1123.29058 0.0909 1.3956 299.2 12/18 SO_3257 P.TAVINHLAQR.I 8. 8 / 34 0 1120.23709 0.0998 1.3818 283.7 11/20 SO_1792 I.LVGADPASQVY.V 9. 9 / 48 0 1119.34184 0.1200 1.3508 266.9 10/18 SO_2519 V.ASLVGLFKQR.D 10. 10 /165 0 1121.26822 0.1219 1.3478 218.0 12/20 SO_4177 D.NTSPPKPPVSP.L 177. 177 / 1 0 1124.36162 0.4179 0.8935 476.2 11/18 SO_4145 Y.IASITPLRPR.Y 1. 0 SO_0308 conserved inner membrane protein 2. 0 SO_2153 MoxR family ATPase 3. 0 SO_2742 hybrid sensor histidine kinase =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2645.2645.3.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2645.2645.3.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 02:50 PM, 0.4 sec. on pnode20.emsl.pnl.gov (M+H)+ mass = 1682.78200 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO total inten = 5702.9, lowest Sp = 227.8, # matched peptides = 71280 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 10 0 1682.90149 0.0000 2.2426 403.8 21/64 SO_2901 Q.VVISGSGLFTPPHGISN.E 2. 2 / 24 0 1679.89591 0.0257 2.1850 363.4 19/64 SO_4221 A.LDGLSDHLGDIILIAGG.D 3. 3 / 18 0 1680.93027 0.0559 2.1171 374.3 18/56 SO_1143 K.PDGLAVQVVQEIQKR.I 4. 4 / 20 0 1684.96206 0.1517 1.9024 370.0 19/60 SO_1122 E.SRLAGIIGDISDVVRL.A 5. 5 /388 0 1679.91618 0.1600 1.8838 240.2 17/60 SO_0747 I.TPTATGFMTLDEIPKG.E 6. 6 / 13 0 1679.98541 0.1808 1.8372 384.9 18/56 SO_1194 A.KPKLAIQEINNQAIV.A 7. 7 / 39 0 1679.91941 0.1882 1.8205 347.3 17/56 SO_1457 S.GNEEIILSDRALAFM.V 8. 8 /187 0 1680.86749 0.2142 1.7621 271.1 17/56 SO_2367 D.KAQTDGFIQDAAQMR.K 9. 9 / 66 0 1679.83313 0.2240 1.7401 322.7 18/60 SO_2113 V.LPSNMSWDGSSSLLAN.F 10. 10 /134 0 1682.04185 0.2329 1.7202 285.4 16/60 SO_1268 G.LLCGYIGMVEGLKPST.P 389. 389 / 1 0 1679.98864 0.7311 0.6030 497.1 19/56 SO_4539 D.RNQAEQKLIGIKLAP.E 1. 0 SO_2901 3-oxoacyl-(acyl-carrier-protein) synthase III (FabH-2) 2. 0 SO_4221 UDP-N-acetylmuramoylalanine--D-glutamate ligase 3. 0 SO_1143 periplasmic solute binding protein =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2646.2646.2.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2646.2646.2.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 09:32 AM, 0.4 sec. on pnode18.emsl.pnl.gov (M+H)+ mass = 1386.18200 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO total inten = 4179.7, lowest Sp = 158.1, # matched peptides = 74534 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 1 0 1387.52097 0.0000 2.8256 414.6 16/22 SO_0756 W.EDSERLLAVLNQ.S 2. 2 / 72 0 1387.47460 0.0546 2.6713 229.4 15/28 SO_2194 E.EDDGEALIGLGGGAL.L 3. 3 /317 0 1387.71549 0.1733 2.3359 176.3 12/24 SO_2594 I.CSLAAVIWQLGLL.T 4. 4 / 30 0 1388.67998 0.1742 2.3333 265.5 14/24 SO_1313 K.LFALAVNNLLAKT.K 5. 5 /426 0 1388.50573 0.1847 2.3037 164.4 13/26 SO_1887 V.EDSALVINGNIATA.G 6. 6 / 16 0 1387.47460 0.1901 2.2885 291.1 15/24 SO_2961 D.EDDANLQLLLDGA.E 7. 7 / 58 0 1387.67066 0.2033 2.2512 236.8 14/24 SO_4603 S.MKNIGILEGDLLA.V 8. 8 / 22 0 1388.57560 0.2058 2.2442 283.3 14/24 SO_3496 D.LMDANIAVANARE.V 9. 9 /208 0 1388.65865 0.2060 2.2436 191.8 13/24 SO_0228 Q.DKMGIALQKLAAE.D 10. 10 / 27 0 1386.61925 0.2132 2.2233 275.1 15/24 SO_2910 T.GSIDNGILKLIDK.T 1. 0 SO_0756 phospho-2-dehydro-3-deoxyheptonate aldolase, phe-sensitive, AroG 2. 0 SO_2194 OmpA family protein 3. 0 SO_2594 transport protein, RND superfamily =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2646.2646.3.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2646.2646.3.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 02:43 PM, 0.7 sec. on pnode19.emsl.pnl.gov (M+H)+ mass = 2078.76900 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO total inten = 4179.7, lowest Sp = 143.9, # matched peptides = 70617 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 66 0 2076.37583 0.0000 2.1068 198.5 18/72 SO_4465 T.LDGLTETLIGQFELVAVKE.I 2. 2 /339 0 2080.43451 0.0046 2.0971 154.0 19/72 SO_3706 V.SDKMYELFGAGGFVIAFKV.L 3. 3 /446 0 2079.41614 0.0777 1.9431 147.1 18/72 SO_4774 Q.STTGHVAKRCLKHNLKGVE.G 4. 4 / 36 0 2079.32340 0.0913 1.9144 220.1 19/68 SO_2355 E.DTDHQMLNGKIIEHAKDL.A 5. 5 / 27 0 2080.53936 0.0916 1.9138 228.8 21/68 SO_2798 W.SMLVDNYLMLIPLLAFPE.A 6. 6 / 31 0 2080.52401 0.1097 1.8758 223.9 19/68 SO_4456 Q.SQLCGWFYRVLTPGIILL.G 7. 7 / 4 0 2078.46160 0.1207 1.8526 294.6 23/76 SO_1356 M.SMIEKLPGVGQLPPDALAQI.Q 8. 8 / 50 0 2078.35182 0.1239 1.8458 208.3 21/72 SO_2402 L.EKAYEDAETVIGIINGKVK.G 9. 9 / 5 0 2078.38193 0.1387 1.8146 292.4 20/68 SO_4194 A.YPQVGNALVKWICSGQWQ.H 10. 10 /100 0 2076.27469 0.1387 1.8145 190.1 21/76 SO_2352 D.MLAIVENGNALSDSQSAQLN.Q 60. 60 / 1 0 2081.54853 0.3253 1.4214 334.9 27/84 SO_4014 S.LTMILSAIPLALATGPGSLGLA.N 1. 0 SO_4465 conserved domain protein 2. 0 SO_3706 NupC-like nucleoside:proton symporter, CNT family 3. 0 SO_4774 pseudogene: site-specific recombinase, phage integrase family, truncat =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2647.2647.2.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2647.2647.2.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 01:55 PM, 0.4 sec. on pnode21.emsl.pnl.gov (M+H)+ mass = 1075.61800 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO total inten = 6381.7, lowest Sp = 203.7, # matched peptides = 79327 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 1 0 1073.18520 0.0000 2.0617 584.7 14/18 SO_3145 K.VEGNSIQVAR.E 2. 2 / 12 0 1075.15641 0.1823 1.6858 348.5 11/18 SO_0097 R.HADAGYEIAK.N 3. 3 / 3 0 1074.16673 0.2250 1.5978 437.3 12/20 SO_0150 D.IDDGSGAIVIN.K 4. 4 / 43 0 1074.25300 0.2760 1.4927 305.8 10/18 SO_2801 R.VETAKALLTQ.F 5. 5 /446 0 1074.16673 0.2850 1.4741 207.2 9/16 SO_2216 G.VETQEQLQV.M 6. 6 / 2 0 1074.16673 0.2904 1.4629 448.4 12/18 SO_2420 K.VEDNSALVLN.L 7. 7 /312 0 1076.18262 0.2931 1.4575 219.8 10/18 SO_4608 I.TDKQLASAIE.Q 8. 8 /268 0 1073.24861 0.3262 1.3890 224.9 9/18 SO_0228 G.VECNVGKPQV.A 9. 9 /124 0 1074.29783 0.3777 1.2830 258.0 10/16 SO_2679 L.VELKNVPFK.Q 10. 10 /392 0 1076.17939 0.3805 1.2772 211.9 9/18 SO_4162 N.TELSALEIAE.K 1. 0 SO_3145 electron transfer flavoprotein, beta subunit 2. 0 SO_0097 urocanate hydratase, HutU 3. 0 SO_0150 expressed protein =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2647.2647.3.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2647.2647.3.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 02:43 PM, 0.4 sec. on pnode19.emsl.pnl.gov (M+H)+ mass = 1612.92400 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO total inten = 6383.0, lowest Sp = 199.5, # matched peptides = 72419 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 /108 0 1615.72717 0.0000 1.7339 249.8 16/56 SO_4422 N.KVDTDLDGANISPNR.I 2. 2 / 47 0 1615.87686 0.0386 1.6669 279.5 18/56 SO_0637 L.MEALDNPAAVNTKLK.L 3. 3 / 11 0 1611.07340 0.0521 1.6435 335.4 17/52 SO_4155 T.WCKTILVSCILSMI.M 4. 4 /455 0 1615.87686 0.0833 1.5895 203.3 15/52 SO_4238 S.ILKCQNLLQLGENE.A 5. 5 / 32 0 1614.86859 0.0944 1.5702 298.7 19/56 SO_3213 S.NDTEVLTAAVRIALK.R 6. 6 /427 0 1615.77031 0.1150 1.5346 205.8 14/48 SO_0445 V.EVQTQLQNLEKER.V 7. 7 / 24 0 1610.85925 0.1312 1.5065 307.4 17/56 SO_2419 P.ELINTCIGCNQACLD.H 8. 8 /297 0 1610.94012 0.1688 1.4413 217.8 15/60 SO_2486 G.PVPLIPGVASISEVMT.G 9. 9 /162 0 1615.85336 0.1745 1.4314 235.6 16/60 SO_1700 A.IAADAQTVGVKLTLSQ.S 10. 10 /430 0 1614.86859 0.1812 1.4198 205.6 15/56 SO_1274 Q.LELLDGKGIRSVVNT.E 105. 105 / 1 0 1612.72021 0.3963 1.0468 417.3 19/52 SO_2793 H.FIEPAGNEYAVWSE.- 1. 0 SO_4422 TonB-dependent receptor 2. 0 SO_0637 expressed protein 3. 0 SO_4155 sensor histidine kinase for thiosulfate/tetrathionate response, TtrS =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2648.2648.2.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2648.2648.2.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 09:32 AM, 0.3 sec. on pnode18.emsl.pnl.gov (M+H)+ mass = 913.95400 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO total inten = 4404.9, lowest Sp = 195.5, # matched peptides = 69066 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 5 0 913.05656 0.0000 1.6440 419.0 10/14 SO_3102 M.RAITQVPQ.R 2. 2 / 21 0 911.16685 0.0162 1.6173 348.5 9/14 SO_0166 G.VKLKVVPQ.I 3. 3 /174 0 913.09647 0.1174 1.4511 241.5 8/14 SO_4408 A.VSRPEVIL.K 4. 4 / 29 0 911.10577 0.1337 1.4243 334.5 9/14 SO_1300 S.WGPMILGH.N 5. 5 / 52 0 914.15110 0.1364 1.4198 304.9 8/14 SO_3695 G.RAIVMPNL.V 6. 6 /408 0 912.06534 0.1369 1.4190 196.8 7/16 SO_2053 K.GIGIVQLPD.Y 7. 7 /240 0 913.05333 0.1503 1.3969 224.3 8/14 SO_1421 N.INNPDLVK.I 8. 8 / 97 0 912.10847 0.1568 1.3862 274.0 8/14 SO_2403 E.KDPVQVIL.E 9. 9 /354 0 911.07904 0.1583 1.3837 204.1 8/16 SO_0280 G.VGAIVAAYF.Y 10. 10 /152 0 911.98229 0.1648 1.3730 248.3 8/16 SO_2202 R.NNIQPTPAG.E 67. 67 / 1 0 914.25442 0.3289 1.1032 479.2 11/14 SO_4207 Q.LMVPMLLP.L 1. 0 SO_3102 AcrA/AcrE family protein 2. 0 SO_0166 general secretion pathway protein, GspD 3. 0 SO_4408 virulence regulator BipA =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2648.2648.3.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2648.2648.3.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 03:10 PM, 0.4 sec. on pnode17.emsl.pnl.gov (M+H)+ mass = 1370.42700 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO total inten = 4435.7, lowest Sp = 183.6, # matched peptides = 71574 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 /347 0 1368.65045 0.0000 2.0624 194.2 13/44 SO_2318 G.AKAWVVKPFQPP.Q 2. 2 / 23 0 1367.66230 0.1285 1.7974 279.0 18/52 SO_0187 A.IVVGASNAKGKPLI.F 3. 3 / 25 0 1368.64707 0.2119 1.6253 275.7 17/56 SO_0848 A.AVAAATAVGVTLPVK.M 4. 4 /197 0 1367.66077 0.2384 1.5707 212.4 13/44 SO_0568 D.AIAYHKLEVPLL.D 5. 5 /120 0 1368.58106 0.2491 1.5487 229.6 14/48 SO_1563 V.ILIVNTASECGFT.P 6. 6 /220 0 1368.68697 0.2517 1.5432 208.2 14/52 SO_4519 T.ALSTLAGVVLTPLI.I 7. 7 / 4 0 1369.50411 0.2587 1.5289 342.2 14/40 SO_1444 D.DNDFSFRELLI.D 8. 8 /149 0 1370.53201 0.2664 1.5129 223.5 12/40 SO_3084 F.ILDSEYRFVEV.N 9. 9 / 43 0 1368.56079 0.2710 1.5035 261.8 16/52 SO_4206 I.VQAAADQGVSPLIV.I 10. 10 /221 0 1368.62266 0.2712 1.5031 208.1 13/40 SO_2148 T.LVEMEFYLPLN.R 102. 102 / 1 0 1369.46420 0.4543 1.1254 454.4 18/44 SO_2156 V.IDNNQVHGFEVP.D 1. 0 SO_2318 response regulator receiver domain protein 2. 0 SO_0187 subfamily S8A unassigned peptidases 3. 0 SO_0848 periplasmic nitrate reductase, catalytic subunit, NapA =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2649.2649.2.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2649.2649.2.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 01:55 PM, 0.4 sec. on pnode21.emsl.pnl.gov (M+H)+ mass = 1222.69100 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO total inten = 7270.9, lowest Sp = 255.4, # matched peptides = 70022 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 1 0 1223.36055 0.0000 3.0044 1421.9 18/22 SO_1779 K.AKFTNATVDAGK.V 2. 2 / 50 0 1223.27427 0.2259 2.3256 414.5 11/20 SO_4615 K.QAFTNANLTDQ.W 3. 3 / 54 0 1223.36378 0.3239 2.0314 409.1 11/20 SO_4267 A.AQHEQALVAQK.H 4. 4 / 83 0 1223.22790 0.3627 1.9146 377.7 11/20 SO_1629 V.QAEQDGFVEAE.- 5. 5 / 71 0 1224.30709 0.4015 1.7980 388.6 10/16 SO_4750 A.QYRNEWAKE.V 6. 6 / 79 0 1223.40691 0.4112 1.7690 379.7 11/20 SO_A0163 D.KSATIQRYAGK.E 7. 7 / 48 0 1224.30540 0.4155 1.7561 414.8 11/20 SO_4387 I.RDYGNGITAKE.L 8. 8 /101 0 1224.43005 0.4223 1.7356 362.9 10/18 SO_3439 N.SLPEYFVLQK.Q 9. 9 /164 0 1223.38405 0.4341 1.7001 329.4 10/20 SO_0930 A.QAFIQECQAKG.E 10. 10 / 17 0 1224.30217 0.4431 1.6732 508.1 13/20 SO_4571 V.VTQVSGFNDEK.D 1. 0 SO_1779 Outer membrane decaheme cytochrome c (OmcA) 2. 0 SO_4615 cytochrome c oxidase biogenesis protein, SenC 3. 0 SO_4267 type I restriction-modification system, R subunit, HsdR_2 =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2649.2649.3.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2649.2649.3.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 03:10 PM, 0.4 sec. on pnode17.emsl.pnl.gov (M+H)+ mass = 1833.53400 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO total inten = 7275.4, lowest Sp = 187.5, # matched peptides = 72005 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 74 0 1833.17005 0.0000 1.7799 247.4 17/60 SO_4724 H.ECNRVRVTVEGQLLLC.L 2. 2 / 91 0 1835.05113 0.0632 1.6674 240.2 17/64 SO_2554 R.YAIEATLDAELAQARAK.L 3. 3 / 78 0 1834.14957 0.0905 1.6187 246.0 17/64 SO_2785 A.KPGLFSKLFSAIGSFFS.S 4. 4 / 38 0 1835.14710 0.0957 1.6095 267.8 16/60 SO_4623 E.RQILHTIRGVGLSLRD.E 5. 5 / 32 0 1835.94639 0.1269 1.5540 274.1 17/64 SO_0840 P.GEPDFVKEGDIVTAEQT.L 6. 6 /167 0 1836.21014 0.1365 1.5370 222.2 16/64 SO_2858 F.VALIFVYAAKANALDKK.Y 7. 7 / 43 0 1832.05370 0.1678 1.4812 263.9 17/64 SO_2606 F.RQIPVGSVVSYRLDGNA.R 8. 8 / 13 0 1836.23041 0.1709 1.4757 306.7 22/72 SO_4689 N.YALMALLAVGALFTAVGGP.R 9. 9 /121 0 1833.88905 0.1831 1.4539 229.9 17/60 SO_0590 S.EAAQSEPEAYKSFNDF.F 10. 10 / 24 0 1833.31603 0.1848 1.4510 282.6 16/64 SO_0567 V.SLLLAFIFGGLVCLLRP.R 292. 291 / 1 0 1836.14890 0.6224 0.6721 474.3 22/68 SO_1725 K.QVTAFIGPSGCGKSTLLR.C 1. 0 SO_4724 tungsten cofactor biosynthesis protein 2. 0 SO_2554 conserved hypothetical protein 3. 0 SO_2785 ribonuclease E (Rne) =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2651.2651.2.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2651.2651.2.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 04:52 PM, 0.6 sec. on P1 (M+H)+ mass = 955.33900 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO total inten = 4144.1, lowest Sp = 189.1, # matched peptides = 67792 # amino acids = 1389695, # proteins = 4198, D:\Database\ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 80 0 955.00394 0.0000 1.7644 276.1 9/14 SO_0231 K.TLETDGYR.A 2. 2 /394 0 955.07058 0.1471 1.5049 199.9 8/14 SO_3415 G.DVESFMAR.L 3. 3 /186 0 956.03184 0.2500 1.3233 234.4 8/14 SO_3665 Y.VDETLHEI.H 4. 4 / 50 0 956.07667 0.2623 1.3017 290.9 10/14 SO_3615 L.FIDEHVPV.M 5. 5 /237 0 956.11811 0.2662 1.2947 222.3 9/16 SO_1375 A.TLVPGELVQ.A 6. 6 /126 0 955.04708 0.2687 1.2903 250.8 9/14 SO_3052 P.NTQTYSIK.G 7. 7 / 57 0 954.06231 0.2978 1.2390 287.8 10/14 SO_2797 K.KSPHKDEL.I 8. 8 / 33 0 958.09410 0.3141 1.2103 307.8 10/18 SO_1518 R.EGGLAALQAK.V 9. 9 /173 0 956.07821 0.3333 1.1763 237.2 9/16 SO_2926 Q.DVKAQGLPQ.A 10. 10 /151 0 955.09021 0.3374 1.1691 244.0 10/16 SO_0766 S.LTHGTLVVD.V 314. 312 / 1 0 957.11257 0.6723 0.5783 539.0 11/14 SO_4254 A.DTPRRIAK.M 1. 0 SO_0231 ribosomal protein L3, RplC 2. 0 SO_3415 bifunctional aspartokinase I / homoserine dehydrogenase I, ThrA 3. 0 SO_3665 ABC transporter ATP-binding/permease protein =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2651.2651.3.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2651.2651.3.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 02:50 PM, 0.4 sec. on pnode20.emsl.pnl.gov (M+H)+ mass = 1432.50500 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO total inten = 4165.2, lowest Sp = 150.3, # matched peptides = 75393 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 /405 0 1434.62246 0.0000 1.4570 155.9 12/44 SO_2541 M.SLIIANQLERYN.G 2. 2 /339 0 1434.61770 0.0016 1.4547 160.3 13/48 SO_3454 Q.ITPWLDLGYEGGI.R 3. 3 / 88 0 1433.67438 0.0158 1.4340 200.1 15/52 SO_1900 L.LAGATTLLYEGKPV.G 4. 4 /235 0 1432.60980 0.0331 1.4088 170.9 15/52 SO_0931 I.HAGAKQVLISHPSS.A 5. 5 / 56 0 1432.67152 0.0434 1.3938 214.1 14/48 SO_1819 L.TIPDASRKLIQSC.G 6. 6 /107 0 1432.60011 0.0447 1.3919 195.8 16/52 SO_3138 Q.DADLPVVLLTGFGD.I 7. 7 /126 0 1429.52133 0.1070 1.3012 191.3 15/48 SO_2045 A.QPSNGFGHSIAQW.Q 8. 8 /334 0 1429.63936 0.1109 1.2955 160.5 14/48 SO_4122 K.SVIEFIDDAPLLP.E 9. 9 /464 0 1434.66083 0.1244 1.2758 152.0 12/48 SO_0497 A.LVVGEWGVYVVDV.K 10. 10 /130 0 1432.69608 0.1413 1.2512 190.2 14/44 SO_0818 P.TLRQQLAFAKQK.L 227. 227 / 1 0 1430.74190 0.4905 0.7424 296.1 19/48 SO_4452 V.KVNAVLLKGMNDK.D 1. 0 SO_2541 response regulator receiver domain protein 2. 0 SO_3454 expressed protein 3. 0 SO_1900 propionyl-CoA synthetase, PrpE =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2652.2652.2.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2652.2652.2.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 01:18 PM, 0.3 sec. on pnode22.emsl.pnl.gov (M+H)+ mass = 1554.81500 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO total inten = 8049.8, lowest Sp = 138.4, # matched peptides = 70995 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 35 0 1555.73530 0.0000 1.8098 229.4 10/24 SO_3428 E.MLGNFSFGDYFKE.D 2. 2 / 5 0 1555.86779 0.0441 1.7299 334.3 12/26 SO_1498 K.IKNAIIDRGCIIPE.G 3. 3 / 22 0 1556.81111 0.0829 1.6597 252.4 10/24 SO_4433 L.DKNASLHIDIWML.R 4. 4 / 57 0 1553.05286 0.1048 1.6201 207.0 9/26 SO_4348 A.KLILVIITVVIIKS.Q 5. 5 / 38 0 1556.80957 0.1263 1.5812 221.4 10/24 SO_2148 R.PVYLCYLYIANHS.R 6. 6 /101 0 1556.85255 0.1306 1.5733 185.9 10/28 SO_3961 D.PVGVAARDLSECLLI.Q 7. 7 / 16 0 1556.89415 0.1523 1.5342 260.7 10/24 SO_0296 T.EHPVLTLMLYNLL.G 8. 8 /249 0 1553.78203 0.1588 1.5223 159.5 9/28 SO_3472 K.LLQAGGNVLLLDEPT.N 9. 9 /341 0 1554.75853 0.1748 1.4934 151.0 9/26 SO_2755 S.DCHRSIIVAHNAAF.D 10. 10 /111 0 1555.66697 0.1770 1.4894 183.6 9/24 SO_3045 A.DLKSDSIEPFQEF.N 11. 11 / 1 0 1554.73011 0.1878 1.4699 350.0 11/26 SO_2440 V.ERALVQPEGNLQSL.L 1. 0 SO_3428 alanyl-tRNA synthetase 2. 0 SO_1498 glucose-1-phosphate adenylyltransferase, GlgC 3. 0 SO_4433 pseudogene: signalling protein with EAL domain, interruption =================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2652.2652.3.out" ================================== QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2652.2652.3.out TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates Licensed to Thermo Electron Corp. 10/10/2007, 09:32 AM, 0.7 sec. on pnode18.emsl.pnl.gov (M+H)+ mass = 2331.71900 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO total inten = 8049.8, lowest Sp = 251.2, # matched peptides = 71037 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 display top 10/3, ion % = 0.0, CODE = 101010 Enzyme:None selected # Rank/Sp Id# (M+H)+ deltCn XCorr Sp Ions Reference Peptide --- -------- -------- -------- ------ ------ ----- ----- --------- ------- 1. 1 / 1 0 2331.51449 0.0000 6.2796 1640.3 35/84 SO_2897 K.SNTAHLNQEHAGQSHAAMVAQK.V 2. 2 / 9 0 2330.84487 0.5583 2.7740 451.8 24/92 SO_2347 G.AAKAVAKALPVLAGKLTGNAIRVP.T 3. 3 /278 0 2332.59717 0.5686 2.7087 279.5 18/80 SO_4741 Q.VLDTAFGDNAAEFLKDIKHVQ.I 4. 4 /111 0 2331.68227 0.5822 2.6234 319.0 20/72 SO_0380 L.KEETVRAQFDMAFKRFAKQ.M 5. 5 / 21 0 2333.58670 0.5830 2.6187 401.8 22/80 SO_0902 G.EPRQIIEPGNRPSQVALLGEE.Y 6. 6 / 65 0 2333.58193 0.5924 2.5598 343.9 19/76 SO_1853 Q.SGEVKVGTKLEIAYFDQYRE.A 7. 7 / 17 0 2331.70053 0.5980 2.5242 419.4 23/80 SO_0539 F.AWDHWAVGGFLALWVIGYGIV.Q 8. 8 / 3 0 2332.60532 0.6065 2.4710 528.9 24/84 SO_0162 F.GSQVYLVNTGWTGGPHGIGKRF.D 9. 9 / 6 0 2332.66550 0.6071 2.4674 480.3 22/80 SO_2094 S.YAARYPSLPIALCGGVFQNQY.L 10. 10 /228 0 2331.61394 0.6091 2.4546 288.9 20/76 SO_4287 P.LRTDLNERAEFLIEIAGDVR.K 1. 0 SO_2897 cell division protein (ZipA) 2. 0 SO_2347 glyceraldehyde 3-phosphate dehydrogenase family protein 3. 0 SO_4741 family C44 non-peptidase homologues