MS/MS Spectra Preprocessor
This software can be used to generate or process SEQUEST .dta files, concatenated .Dta files (_dta.txt), and Mascot .mgf files. The spectra in the files can be tested against one of three filters, with the results reported in a tab-delimited text file. Additionally, new spectra files can be created that only contain spectra passing the filters. Available filters are:
- Amino-acid spacing based spectrum quality
- Intensity threshold based spectrum quality
- Phosporylation neutral loss
Download Links
| Download Software Tool | Download Source Code |
Software Details
| Version | v1.7.3507 | Requirements | Microsoft NET Framework 1.1 |
| Date Updated | August 8, 2009 | File Size (Software Tool) | 578 KB (ZIP) |
| Registration Required | No | File size (Source Code) | 737 KB (ZIP) |
| Developers | Matthew Monroe | ||
| Comments |
See the complete Revision History
for a history of changes to the GUI See the MsMsSpectrumFilter.dll Revision History for a history of changes to the processing DLL |
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Acknowledgment
All publications that utilize this software should provide appropriate acknowledgement to PNNL and the OMICS.PNL.GOV website. However, if the software is extended or modified, then any subsequent publications should include a more extensive statement, using this text or a similar variant:
Portions of this research were supported by the NIH National Center for Research Resources (Grant RR018522), the W.R. Wiley Environmental Molecular Science Laboratory (a national scientific user facility sponsored by the U.S. Department of Energy's Office of Biological and Environmental Research and located at PNNL), and the National Institute of Allergy and Infectious Diseases (NIH/DHHS through interagency agreement Y1-AI-4894-01). PNNL is operated by Battelle Memorial Institute for the U.S. Department of Energy under contract DE-AC05-76RL0 1830.