Biological MS Data and Software Distribution Center at PNNL

MS Data File Trimmer

MSDataFileTrimmer can be used to read an mzXML or mzData file, along with a text file containing scan numbers, and create a new mzXML or mzData file containing only the spectra for the specified scan numbers. This is useful for distributing mzXML/mzData files that only contain the data of interest, for example, along with a synopsis file that only contains the data of interest.

Alternatively, the program can read a MasterDataRow text file that defines dataset names and additional information for processing a series of mzXML/mzData files and related Synopsis/First Hits files. For more information on Synopsis and First Hits files, please see the Peptide File Extractor software page

Please see the Command Line Application Help page for additional information on running this program at the Windows command prompt.

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Software Details
Version v1.1.2991 Requirements Microsoft NET Framework 1.1
Date Updated March 10, 2008 File Size (Software Tool) 1.1 MB (ZIP)
Registration Required No File size (Source Code) 2.8 MB (ZIP)
Developers Matthew Monroe
Comments See the complete Revision History for a history of changes

 

Acknowledgment

All publications that utilize this software should provide appropriate acknowledgement to PNNL and the OMICS.PNL.GOV website. However, if the software is extended or modified, then any subsequent publications should include a more extensive statement, using this text or a similar variant:

Portions of this research were supported by the NIH National Center for Research Resources (Grant RR018522), the W.R. Wiley Environmental Molecular Science Laboratory (a national scientific user facility sponsored by the U.S. Department of Energy's Office of Biological and Environmental Research and located at PNNL), and the National Institute of Allergy and Infectious Diseases (NIH/DHHS through interagency agreement Y1-AI-4894-01). PNNL is operated by Battelle Memorial Institute for the U.S. Department of Energy under contract DE-AC05-76RL0 1830.